Analysis of interatomic Contacts of Structural Units in PDB entry:
5LTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LTM entry

There are 4 chains in PDB entry 5LTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 25GLY 166
B
 ASP 170LEU 563
A
 ASN 25GLY 166
A
 ASP 170LEU 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5LTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
34 45Right-handed alpha
Helix 2
AA2
B
53 73Right-handed alpha
Helix 3
AA3
B
84 88Right-handed 310
Helix 4
AA4
B
96 108Right-handed alpha
Helix 5
AA5
B
117 133Right-handed alpha
Helix 6
AA6
B
140 154Right-handed alpha
Helix 7
AA7
B
170 182Right-handed alpha
Helix 8
AA8
B
199 206Right-handed alpha
Helix 9
AA9
B
216 223Right-handed alpha
Helix 10
AB1
B
225 257Right-handed alpha
Helix 11
AB2
B
261 264Right-handed 310
Helix 12
AB3
B
265 271Right-handed alpha
Helix 13
AB4
B
274 289Right-handed alpha
Helix 14
AB5
B
313 318Right-handed alpha
Helix 15
AB6
B
318 342Right-handed alpha
Helix 16
AB7
B
352 355Right-handed 310
Helix 17
AB8
B
365 395Right-handed alpha
Helix 18
AB9
B
403 407Right-handed 310
Helix 19
AC1
B
418 435Right-handed alpha
Helix 20
AC2
B
439 443Right-handed 310
Helix 21
AC3
B
457 495Right-handed alpha
Helix 22
AC4
B
505 520Right-handed alpha
Helix 23
AC5
B
532 536Right-handed 310
Helix 24
AC6
B
537 551Right-handed alpha
Helix 25
AC7
B
553 559Right-handed alpha
Helix 26
AC8
A
34 45Right-handed alpha
Helix 27
AC9
A
53 73Right-handed alpha
Helix 28
AD1
A
84 88Right-handed 310
Helix 29
AD2
A
96 109Right-handed alpha
Helix 30
AD3
A
117 133Right-handed alpha
Helix 31
AD4
A
140 154Right-handed alpha
Helix 32
AD5
A
170 183Right-handed alpha
Helix 33
AD6
A
199 206Right-handed alpha
Helix 34
AD7
A
216 223Right-handed alpha
Helix 35
AD8
A
225 257Right-handed alpha
Helix 36
AD9
A
261 264Right-handed 310
Helix 37
AE1
A
265 271Right-handed alpha
Helix 38
AE2
A
274 289Right-handed alpha
Helix 39
AE3
A
313 318Right-handed alpha
Helix 40
AE4
A
318 342Right-handed alpha
Helix 41
AE5
A
352 355Right-handed 310
Helix 42
AE6
A
365 395Right-handed alpha
Helix 43
AE7
A
403 407Right-handed 310
Helix 44
AE8
A
418 436Right-handed alpha
Helix 45
AE9
A
439 443Right-handed 310
Helix 46
AF1
A
457 495Right-handed alpha
Helix 47
AF2
A
505 520Right-handed alpha
Helix 48
AF3
A
532 536Right-handed 310
Helix 49
AF4
A
537 552Right-handed alpha
Helix 50
AF5
A
553 559Right-handed alpha
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There are 8 sheets in PDB entry 5LTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
48 49parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
160 162anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
189 192anti-parallel
Strand 3
B
195 198anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 351first strand
Strand 2
B
356 358anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
48 49parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
160 162anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
189 192anti-parallel
Strand 3
A
195 198anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 351first strand
Strand 2
A
356 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il