Analysis of interatomic Contacts of Structural Units in PDB entry:
5LTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LTP entry

There are 12 chains in PDB entry 5LTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -3ILE 57
A
 PHE 61ASP 217
B
 GLU -3ILE 57
B
 PHE 61LEU 224
C
 MET 0ILE 57
C
 PHE 61LEU 224
D
 MET 0ILE 57
D
 PHE 61TYR 225
E
 ALA 1ILE 57
E
 PHE 61LEU 224
F
 MET 0ILE 57
F
 PHE 61ARG 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5LTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 54Right-handed 310
Helix 2
AA2
A
61 64Right-handed 310
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
182 187Right-handed alpha
Helix 5
AA5
B
49 54Right-handed 310
Helix 6
AA6
B
61 64Right-handed 310
Helix 7
AA7
B
72 80Right-handed alpha
Helix 8
AA8
B
182 187Right-handed alpha
Helix 9
AA9
C
49 54Right-handed 310
Helix 10
AB1
C
61 64Right-handed 310
Helix 11
AB2
C
72 80Right-handed alpha
Helix 12
AB3
C
183 188Right-handed alpha
Helix 13
AB4
D
49 54Right-handed 310
Helix 14
AB5
D
61 64Right-handed 310
Helix 15
AB6
D
72 80Right-handed alpha
Helix 16
AB7
D
182 187Right-handed alpha
Helix 17
AB8
E
49 54Right-handed 310
Helix 18
AB9
E
61 64Right-handed 310
Helix 19
AC1
E
72 81Right-handed alpha
Helix 20
AC2
E
182 187Right-handed alpha
Helix 21
AC3
F
49 54Right-handed 310
Helix 22
AC4
F
61 64Right-handed 310
Helix 23
AC5
F
72 80Right-handed alpha
Helix 24
AC6
F
182 188Right-handed alpha
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There are 12 sheets in PDB entry 5LTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
150 161anti-parallel
Strand 3
A
166 177anti-parallel
Strand 4
A
84 92anti-parallel
Strand 5
A
97 107anti-parallel
Strand 6
A
110 120anti-parallel
Strand 7
A
6 15parallel
Strand 8
A
18 28anti-parallel
Strand 9
A
35 41anti-parallel
Strand 10
A
205 215anti-parallel
Strand 11
A
191 201anti-parallel
Strand 12
A
139 147anti-parallel
Strand 13
A
150 161anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 71anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
150 161anti-parallel
Strand 3
B
166 177anti-parallel
Strand 4
B
84 92anti-parallel
Strand 5
B
97 107anti-parallel
Strand 6
B
110 120anti-parallel
Strand 7
B
6 15parallel
Strand 8
B
18 28anti-parallel
Strand 9
B
35 41anti-parallel
Strand 10
B
205 216anti-parallel
Strand 11
B
191 201anti-parallel
Strand 12
B
139 147anti-parallel
Strand 13
B
150 161anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
70 71anti-parallel
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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 136first strand
Strand 2
C
150 161anti-parallel
Strand 3
C
166 177anti-parallel
Strand 4
C
84 92anti-parallel
Strand 5
C
97 107anti-parallel
Strand 6
C
110 120anti-parallel
Strand 7
C
6 15parallel
Strand 8
C
18 28anti-parallel
Strand 9
C
35 41anti-parallel
Strand 10
C
205 216anti-parallel
Strand 11
C
191 201anti-parallel
Strand 12
C
139 147anti-parallel
Strand 13
C
150 161anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
70 71anti-parallel
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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 136first strand
Strand 2
D
150 161anti-parallel
Strand 3
D
166 177anti-parallel
Strand 4
D
84 92anti-parallel
Strand 5
D
97 107anti-parallel
Strand 6
D
110 120anti-parallel
Strand 7
D
6 15parallel
Strand 8
D
18 28anti-parallel
Strand 9
D
35 41anti-parallel
Strand 10
D
205 216anti-parallel
Strand 11
D
191 201anti-parallel
Strand 12
D
139 147anti-parallel
Strand 13
D
150 161anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
70 71anti-parallel
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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 136first strand
Strand 2
E
150 161anti-parallel
Strand 3
E
166 177anti-parallel
Strand 4
E
84 92anti-parallel
Strand 5
E
97 107anti-parallel
Strand 6
E
110 120anti-parallel
Strand 7
E
6 15parallel
Strand 8
E
18 28anti-parallel
Strand 9
E
35 41anti-parallel
Strand 10
E
205 216anti-parallel
Strand 11
E
191 201anti-parallel
Strand 12
E
139 147anti-parallel
Strand 13
E
150 161anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 67first strand
Strand 2
E
70 71anti-parallel
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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
133 136first strand
Strand 2
F
150 161anti-parallel
Strand 3
F
166 177anti-parallel
Strand 4
F
84 92anti-parallel
Strand 5
F
97 120anti-parallel
Strand 6
F
1 15parallel
Strand 7
F
18 28anti-parallel
Strand 8
F
35 41anti-parallel
Strand 9
F
205 216anti-parallel
Strand 10
F
191 201anti-parallel
Strand 11
F
139 147anti-parallel
Strand 12
F
150 161anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
66 67first strand
Strand 2
F
70 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il