Analysis of interatomic Contacts of Structural Units in PDB entry:
5LTQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LTQ entry

There are 12 chains in PDB entry 5LTQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	ILE 57
A	PHE 61	MET 219
D	ASN -1	ILE 57
D	PHE 61	MET 219
B	ALA 1	ILE 57
B	PHE 61	MET 219
C	ALA 1	ILE 57
C	PHE 61	MET 219
E	LEU 3	ILE 57
E	PHE 61	MET 219
H	LEU 3	ILE 57
H	PHE 61	THR 161

There are 62 helices in PDB entry 5LTQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	54	Right-handed 310
Helix 2	AA2	A	61	65	Right-handed 310
Helix 3	AA3	A	72	80	Right-handed alpha
Helix 4	AA4	A	182	187	Right-handed alpha
Helix 5	AA5	D	49	54	Right-handed 310
Helix 6	AA6	D	61	65	Right-handed 310
Helix 7	AA7	D	72	80	Right-handed alpha
Helix 8	AA8	D	182	188	Right-handed alpha
Helix 9	AA9	B	49	54	Right-handed 310
Helix 10	AB1	B	61	64	Right-handed 310
Helix 11	AB2	B	72	80	Right-handed alpha
Helix 12	AB3	B	182	188	Right-handed alpha
Helix 13	AB4	C	49	54	Right-handed 310
Helix 14	AB5	C	61	64	Right-handed 310
Helix 15	AB6	C	72	80	Right-handed alpha
Helix 16	AB7	C	182	187	Right-handed alpha
Helix 17	AB8	E	49	54	Right-handed 310
Helix 18	AB9	E	61	64	Right-handed 310
Helix 19	AC1	E	72	80	Right-handed alpha
Helix 20	AC2	E	182	188	Right-handed alpha
Helix 21	AC3	H	49	54	Right-handed 310
Helix 22	AC4	H	61	65	Right-handed 310
Helix 23	AC5	H	72	80	Right-handed alpha
Helix 24	AC6	H	182	188	Right-handed alpha
Helix 25	AC7	F	49	54	Right-handed 310
Helix 26	AC8	F	61	64	Right-handed 310
Helix 27	AC9	F	72	80	Right-handed alpha
Helix 28	AD1	F	182	187	Right-handed alpha
Helix 29	AD2	F	221	225	Right-handed 310
Helix 30	AD3	G	49	54	Right-handed 310
Helix 31	AD4	G	61	65	Right-handed 310
Helix 32	AD5	G	72	80	Right-handed alpha
Helix 33	AD6	G	182	187	Right-handed alpha
Helix 34	AD7	I	49	54	Right-handed 310
Helix 35	AD8	I	72	80	Right-handed alpha
Helix 36	AD9	I	182	188	Right-handed alpha
Helix 37	AE1	L	49	54	Right-handed 310
Helix 38	AE2	L	61	65	Right-handed 310
Helix 39	AE3	L	72	81	Right-handed alpha
Helix 40	AE4	L	182	188	Right-handed alpha
Helix 41	AE5	J	49	54	Right-handed 310
Helix 42	AE6	J	61	65	Right-handed 310
Helix 43	AE7	J	72	81	Right-handed alpha
Helix 44	AE8	J	182	188	Right-handed alpha
Helix 45	AE9	J	221	225	Right-handed 310
Helix 46	AF1	K	49	54	Right-handed 310
Helix 47	AF2	K	72	81	Right-handed alpha
Helix 48	AF3	K	182	188	Right-handed alpha
Helix 49	AF4	M	49	54	Right-handed 310
Helix 50	AF5	M	72	81	Right-handed alpha
Helix 51	AF6	M	182	188	Right-handed alpha
Helix 52	AF7	P	49	54	Right-handed 310
Helix 53	AF8	P	61	65	Right-handed 310
Helix 54	AF9	P	72	81	Right-handed alpha
Helix 55	AG1	P	182	188	Right-handed alpha
Helix 56	AG2	N	49	54	Right-handed 310
Helix 57	AG3	N	61	65	Right-handed 310
Helix 58	AG4	N	72	81	Right-handed alpha
Helix 59	AG5	N	182	188	Right-handed alpha
Helix 60	AG6	O	49	54	Right-handed 310
Helix 61	AG7	O	72	81	Right-handed alpha
Helix 62	AG8	O	182	188	Right-handed alpha

There are 21 sheets in PDB entry 5LTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	150	161	anti-parallel
Strand 3	A	167	177	anti-parallel
Strand 4	A	84	92	anti-parallel
Strand 5	A	97	107	anti-parallel
Strand 6	A	110	120	anti-parallel
Strand 7	A	6	15	parallel
Strand 8	A	18	29	anti-parallel
Strand 9	A	34	41	anti-parallel
Strand 10	A	205	215	anti-parallel
Strand 11	A	191	201	anti-parallel
Strand 12	A	139	147	anti-parallel
Strand 13	A	150	161	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	136	first strand
Strand 2	D	150	161	anti-parallel
Strand 3	D	167	177	anti-parallel
Strand 4	D	84	92	anti-parallel
Strand 5	D	97	107	anti-parallel
Strand 6	D	110	120	anti-parallel
Strand 7	D	6	15	parallel
Strand 8	D	18	28	anti-parallel
Strand 9	D	35	41	anti-parallel
Strand 10	D	205	215	anti-parallel
Strand 11	D	191	201	anti-parallel
Strand 12	D	139	147	anti-parallel
Strand 13	D	150	161	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	136	first strand
Strand 2	B	150	161	anti-parallel
Strand 3	B	166	177	anti-parallel
Strand 4	B	84	92	anti-parallel
Strand 5	B	97	107	anti-parallel
Strand 6	B	110	120	anti-parallel
Strand 7	B	6	15	parallel
Strand 8	B	18	28	anti-parallel
Strand 9	B	35	41	anti-parallel
Strand 10	B	205	215	anti-parallel
Strand 11	B	191	201	anti-parallel
Strand 12	B	139	147	anti-parallel
Strand 13	B	150	161	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	70	71	anti-parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	136	first strand
Strand 2	C	150	161	anti-parallel
Strand 3	C	167	177	anti-parallel
Strand 4	C	84	92	anti-parallel
Strand 5	C	97	107	anti-parallel
Strand 6	C	110	120	anti-parallel
Strand 7	C	6	15	parallel
Strand 8	C	18	28	anti-parallel
Strand 9	C	35	41	anti-parallel
Strand 10	C	205	215	anti-parallel
Strand 11	C	191	201	anti-parallel
Strand 12	C	139	147	anti-parallel
Strand 13	C	150	161	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	70	71	anti-parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	136	first strand
Strand 2	E	150	161	anti-parallel
Strand 3	E	167	177	anti-parallel
Strand 4	E	84	92	anti-parallel
Strand 5	E	97	107	anti-parallel
Strand 6	E	110	120	anti-parallel
Strand 7	E	6	15	parallel
Strand 8	E	18	28	anti-parallel
Strand 9	E	35	41	anti-parallel
Strand 10	E	205	215	anti-parallel
Strand 11	E	191	201	anti-parallel
Strand 12	E	139	147	anti-parallel
Strand 13	E	150	161	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	67	first strand
Strand 2	E	70	71	anti-parallel

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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	136	first strand
Strand 2	H	150	161	anti-parallel
Strand 3	H	167	177	anti-parallel
Strand 4	H	84	92	anti-parallel
Strand 5	H	97	107	anti-parallel
Strand 6	H	110	120	anti-parallel
Strand 7	H	6	15	parallel
Strand 8	H	18	28	anti-parallel
Strand 9	H	35	41	anti-parallel
Strand 10	H	205	215	anti-parallel
Strand 11	H	191	201	anti-parallel
Strand 12	H	139	147	anti-parallel
Strand 13	H	150	161	anti-parallel

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There are 13 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	136	first strand
Strand 2	F	150	161	anti-parallel
Strand 3	F	167	177	anti-parallel
Strand 4	F	84	92	anti-parallel
Strand 5	F	97	107	anti-parallel
Strand 6	F	110	120	anti-parallel
Strand 7	F	6	15	parallel
Strand 8	F	18	28	anti-parallel
Strand 9	F	35	41	anti-parallel
Strand 10	F	205	215	anti-parallel
Strand 11	F	191	201	anti-parallel
Strand 12	F	139	147	anti-parallel
Strand 13	F	150	161	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	67	first strand
Strand 2	F	70	71	anti-parallel

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There are 13 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	136	first strand
Strand 2	G	150	161	anti-parallel
Strand 3	G	166	177	anti-parallel
Strand 4	G	84	92	anti-parallel
Strand 5	G	97	107	anti-parallel
Strand 6	G	110	120	anti-parallel
Strand 7	G	6	15	parallel
Strand 8	G	18	28	anti-parallel
Strand 9	G	35	41	anti-parallel
Strand 10	G	205	215	anti-parallel
Strand 11	G	191	201	anti-parallel
Strand 12	G	139	147	anti-parallel
Strand 13	G	150	161	anti-parallel

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There are 13 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	136	first strand
Strand 2	I	150	161	anti-parallel
Strand 3	I	166	177	anti-parallel
Strand 4	I	84	92	anti-parallel
Strand 5	I	97	107	anti-parallel
Strand 6	I	110	120	anti-parallel
Strand 7	I	6	15	parallel
Strand 8	I	18	29	anti-parallel
Strand 9	I	34	41	anti-parallel
Strand 10	I	205	215	anti-parallel
Strand 11	I	191	201	anti-parallel
Strand 12	I	139	147	anti-parallel
Strand 13	I	150	161	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	67	first strand
Strand 2	I	70	71	anti-parallel

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There are 13 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	133	136	first strand
Strand 2	L	150	161	anti-parallel
Strand 3	L	167	177	anti-parallel
Strand 4	L	84	92	anti-parallel
Strand 5	L	97	107	anti-parallel
Strand 6	L	110	120	anti-parallel
Strand 7	L	6	15	parallel
Strand 8	L	18	28	anti-parallel
Strand 9	L	35	41	anti-parallel
Strand 10	L	205	215	anti-parallel
Strand 11	L	191	201	anti-parallel
Strand 12	L	139	147	anti-parallel
Strand 13	L	150	161	anti-parallel

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There are 13 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	136	first strand
Strand 2	J	150	161	anti-parallel
Strand 3	J	166	177	anti-parallel
Strand 4	J	84	92	anti-parallel
Strand 5	J	97	107	anti-parallel
Strand 6	J	110	120	anti-parallel
Strand 7	J	6	15	parallel
Strand 8	J	18	28	anti-parallel
Strand 9	J	35	41	anti-parallel
Strand 10	J	205	215	anti-parallel
Strand 11	J	191	201	anti-parallel
Strand 12	J	139	147	anti-parallel
Strand 13	J	150	161	anti-parallel

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There are 13 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	136	first strand
Strand 2	K	150	161	anti-parallel
Strand 3	K	167	177	anti-parallel
Strand 4	K	84	92	anti-parallel
Strand 5	K	97	107	anti-parallel
Strand 6	K	110	120	anti-parallel
Strand 7	K	6	15	parallel
Strand 8	K	18	29	anti-parallel
Strand 9	K	34	41	anti-parallel
Strand 10	K	205	215	anti-parallel
Strand 11	K	191	201	anti-parallel
Strand 12	K	139	147	anti-parallel
Strand 13	K	150	161	anti-parallel

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There are 13 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	133	136	first strand
Strand 2	M	150	161	anti-parallel
Strand 3	M	166	177	anti-parallel
Strand 4	M	84	92	anti-parallel
Strand 5	M	97	107	anti-parallel
Strand 6	M	110	120	anti-parallel
Strand 7	M	6	15	parallel
Strand 8	M	18	29	anti-parallel
Strand 9	M	34	41	anti-parallel
Strand 10	M	205	215	anti-parallel
Strand 11	M	191	202	anti-parallel
Strand 12	M	139	147	anti-parallel
Strand 13	M	150	161	anti-parallel

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There are 13 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	133	136	first strand
Strand 2	P	150	161	anti-parallel
Strand 3	P	166	177	anti-parallel
Strand 4	P	84	92	anti-parallel
Strand 5	P	97	107	anti-parallel
Strand 6	P	110	120	anti-parallel
Strand 7	P	6	15	parallel
Strand 8	P	18	29	anti-parallel
Strand 9	P	34	41	anti-parallel
Strand 10	P	205	215	anti-parallel
Strand 11	P	191	201	anti-parallel
Strand 12	P	139	147	anti-parallel
Strand 13	P	150	161	anti-parallel

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There are 13 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	133	136	first strand
Strand 2	N	150	161	anti-parallel
Strand 3	N	166	177	anti-parallel
Strand 4	N	84	92	anti-parallel
Strand 5	N	97	106	anti-parallel
Strand 6	N	110	120	anti-parallel
Strand 7	N	6	15	parallel
Strand 8	N	18	29	anti-parallel
Strand 9	N	34	41	anti-parallel
Strand 10	N	205	215	anti-parallel
Strand 11	N	191	201	anti-parallel
Strand 12	N	139	144	anti-parallel
Strand 13	N	150	161	anti-parallel

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There are 13 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	133	136	first strand
Strand 2	O	150	161	anti-parallel
Strand 3	O	167	177	anti-parallel
Strand 4	O	84	92	anti-parallel
Strand 5	O	97	106	anti-parallel
Strand 6	O	110	120	anti-parallel
Strand 7	O	6	15	parallel
Strand 8	O	18	28	anti-parallel
Strand 9	O	35	41	anti-parallel
Strand 10	O	205	212	anti-parallel
Strand 11	O	191	201	anti-parallel
Strand 12	O	139	144	anti-parallel
Strand 13	O	150	161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LTQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LTQ