Analysis of interatomic Contacts of Structural Units in PDB entry:
5LU4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LU4 entry

There are 2 chains in PDB entry 5LU4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	VAL 872
B	LYS 1	CYS 561

There are 84 helices in PDB entry 5LU4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	36	Right-handed alpha
Helix 2	AA2	A	46	54	Right-handed alpha
Helix 3	AA3	A	63	80	Right-handed alpha
Helix 4	AA4	A	115	127	Right-handed alpha
Helix 5	AA5	A	127	146	Right-handed alpha
Helix 6	AA6	A	151	166	Right-handed alpha
Helix 7	AA7	A	169	173	Right-handed 310
Helix 8	AA8	A	174	194	Right-handed alpha
Helix 9	AA9	A	200	217	Right-handed alpha
Helix 10	AB1	A	218	228	Right-handed alpha
Helix 11	AB2	A	278	283	Right-handed 310
Helix 12	AB3	A	292	299	Right-handed alpha
Helix 13	AB4	A	299	318	Right-handed alpha
Helix 14	AB5	A	343	357	Right-handed alpha
Helix 15	AB6	A	361	367	Right-handed alpha
Helix 16	AB7	A	370	376	Right-handed alpha
Helix 17	AB8	A	384	389	Right-handed alpha
Helix 18	AB9	A	411	421	Right-handed alpha
Helix 19	AC1	A	433	435	Right-handed 310
Helix 20	AC2	A	436	443	Right-handed alpha
Helix 21	AC3	A	455	465	Right-handed alpha
Helix 22	AC4	A	519	533	Right-handed alpha
Helix 23	AC5	A	543	553	Right-handed alpha
Helix 24	AC6	A	563	568	Right-handed 310
Helix 25	AC7	A	570	582	Right-handed alpha
Helix 26	AC8	A	585	594	Right-handed alpha
Helix 27	AC9	A	596	611	Right-handed alpha
Helix 28	AD1	A	654	660	Right-handed alpha
Helix 29	AD2	A	663	667	Right-handed 310
Helix 30	AD3	A	671	676	Right-handed alpha
Helix 31	AD4	A	678	697	Right-handed alpha
Helix 32	AD5	A	713	732	Right-handed alpha
Helix 33	AD6	A	749	755	Right-handed alpha
Helix 34	AD7	A	755	760	Right-handed alpha
Helix 35	AD8	A	769	779	Right-handed alpha
Helix 36	AD9	A	781	787	Right-handed 310
Helix 37	AE1	A	788	795	Right-handed alpha
Helix 38	AE2	A	810	826	Right-handed alpha
Helix 39	AE3	A	835	839	Right-handed 310
Helix 40	AE4	A	840	851	Right-handed alpha
Helix 41	AE5	A	858	860	Right-handed 310
Helix 42	AE6	A	861	869	Right-handed alpha
Helix 43	AE7	B	18	36	Right-handed alpha
Helix 44	AE8	B	46	56	Right-handed alpha
Helix 45	AE9	B	61	80	Right-handed alpha
Helix 46	AF1	B	115	127	Right-handed alpha
Helix 47	AF2	B	127	146	Right-handed alpha
Helix 48	AF3	B	151	166	Right-handed alpha
Helix 49	AF4	B	169	173	Right-handed 310
Helix 50	AF5	B	174	194	Right-handed alpha
Helix 51	AF6	B	200	217	Right-handed alpha
Helix 52	AF7	B	218	228	Right-handed alpha
Helix 53	AF8	B	278	283	Right-handed 310
Helix 54	AF9	B	292	299	Right-handed alpha
Helix 55	AG1	B	299	318	Right-handed alpha
Helix 56	AG2	B	343	357	Right-handed alpha
Helix 57	AG3	B	361	367	Right-handed alpha
Helix 58	AG4	B	370	376	Right-handed alpha
Helix 59	AG5	B	384	389	Right-handed alpha
Helix 60	AG6	B	411	421	Right-handed alpha
Helix 61	AG7	B	433	435	Right-handed 310
Helix 62	AG8	B	436	443	Right-handed alpha
Helix 63	AG9	B	455	465	Right-handed alpha
Helix 64	AH1	B	519	533	Right-handed alpha
Helix 65	AH2	B	543	553	Right-handed alpha
Helix 66	AH3	B	563	568	Right-handed 310
Helix 67	AH4	B	570	582	Right-handed alpha
Helix 68	AH5	B	585	594	Right-handed alpha
Helix 69	AH6	B	596	611	Right-handed alpha
Helix 70	AH7	B	656	660	Right-handed alpha
Helix 71	AH8	B	663	667	Right-handed 310
Helix 72	AH9	B	671	676	Right-handed alpha
Helix 73	AI1	B	678	697	Right-handed alpha
Helix 74	AI2	B	713	732	Right-handed alpha
Helix 75	AI3	B	749	755	Right-handed alpha
Helix 76	AI4	B	755	760	Right-handed alpha
Helix 77	AI5	B	769	779	Right-handed alpha
Helix 78	AI6	B	781	787	Right-handed 310
Helix 79	AI7	B	788	795	Right-handed alpha
Helix 80	AI8	B	810	826	Right-handed alpha
Helix 81	AI9	B	835	839	Right-handed 310
Helix 82	AJ1	B	840	851	Right-handed alpha
Helix 83	AJ2	B	858	860	Right-handed 310
Helix 84	AJ3	B	861	869	Right-handed alpha

There are 12 sheets in PDB entry 5LU4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	4	8	anti-parallel
Strand 3	A	42	45	anti-parallel
Strand 4	A	237	242	anti-parallel
Strand 5	A	92	97	anti-parallel
Strand 6	A	109	112	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	253	258	anti-parallel
Strand 4	A	321	328	anti-parallel
Strand 5	A	331	339	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	513	514	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	395	first strand
Strand 2	A	505	508	anti-parallel
Strand 3	A	496	500	anti-parallel
Strand 4	A	404	409	anti-parallel
Strand 5	A	425	429	parallel
Strand 6	A	445	448	parallel
Strand 7	A	467	470	parallel
Strand 8	A	397	400	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	483	486	anti-parallel
Strand 3	A	489	492	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	540	first strand
Strand 2	A	558	561	parallel
Strand 3	A	615	619	parallel
Strand 4	A	703	708	parallel
Strand 5	A	742	747	parallel
Strand 6	A	765	768	parallel
Strand 7	A	830	833	parallel
Strand 8	A	854	857	parallel
Strand 9	A	536	540	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	4	8	anti-parallel
Strand 3	B	42	45	anti-parallel
Strand 4	B	237	242	anti-parallel
Strand 5	B	92	97	anti-parallel
Strand 6	B	109	112	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	253	258	anti-parallel
Strand 4	B	321	328	anti-parallel
Strand 5	B	331	339	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	513	514	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	395	first strand
Strand 2	B	505	508	anti-parallel
Strand 3	B	496	500	anti-parallel
Strand 4	B	404	409	anti-parallel
Strand 5	B	425	429	parallel
Strand 6	B	445	448	parallel
Strand 7	B	467	470	parallel
Strand 8	B	397	400	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	478	first strand
Strand 2	B	483	486	anti-parallel
Strand 3	B	489	492	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	540	first strand
Strand 2	B	558	561	parallel
Strand 3	B	616	619	parallel
Strand 4	B	704	708	parallel
Strand 5	B	742	747	parallel
Strand 6	B	765	768	parallel
Strand 7	B	830	833	parallel
Strand 8	B	854	857	parallel
Strand 9	B	536	540	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LU4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LU4