Analysis of interatomic Contacts of Structural Units in PDB entry:
5LUC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LUC entry

There are 8 chains in PDB entry 5LUC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 4	LYS 390
B	LYS 5	LYS 390
E	LYS 5	LYS 390
G	LYS 5	LYS 390
M	LYS 5	LYS 390
N	HIS 4	LYS 390
S	LYS 5	LYS 390
T	LYS 5	LYS 390

There are128 helices in PDB entry 5LUC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	16	Right-handed 310
Helix 2	AA2	A	34	42	Right-handed alpha
Helix 3	AA3	A	50	69	Right-handed alpha
Helix 4	AA4	A	81	94	Right-handed alpha
Helix 5	AA5	A	106	119	Right-handed alpha
Helix 6	AA6	A	135	147	Right-handed alpha
Helix 7	AA7	A	168	176	Right-handed alpha
Helix 8	AA8	A	223	233	Right-handed alpha
Helix 9	AA9	A	243	251	Right-handed alpha
Helix 10	AB1	A	265	283	Right-handed alpha
Helix 11	AB2	A	283	305	Right-handed alpha
Helix 12	AB3	A	313	317	Right-handed 310
Helix 13	AB4	A	331	344	Right-handed alpha
Helix 14	AB5	A	351	355	Right-handed 310
Helix 15	AB6	A	364	368	Right-handed 310
Helix 16	AB7	A	369	387	Right-handed alpha
Helix 17	AB8	B	11	16	Right-handed 310
Helix 18	AB9	B	34	42	Right-handed alpha
Helix 19	AC1	B	50	69	Right-handed alpha
Helix 20	AC2	B	81	94	Right-handed alpha
Helix 21	AC3	B	106	119	Right-handed alpha
Helix 22	AC4	B	135	147	Right-handed alpha
Helix 23	AC5	B	168	176	Right-handed alpha
Helix 24	AC6	B	223	233	Right-handed alpha
Helix 25	AC7	B	243	251	Right-handed alpha
Helix 26	AC8	B	265	283	Right-handed alpha
Helix 27	AC9	B	283	305	Right-handed alpha
Helix 28	AD1	B	313	317	Right-handed 310
Helix 29	AD2	B	331	344	Right-handed alpha
Helix 30	AD3	B	351	355	Right-handed 310
Helix 31	AD4	B	364	368	Right-handed 310
Helix 32	AD5	B	369	387	Right-handed alpha
Helix 33	AD6	E	11	16	Right-handed 310
Helix 34	AD7	E	34	42	Right-handed alpha
Helix 35	AD8	E	50	69	Right-handed alpha
Helix 36	AD9	E	81	94	Right-handed alpha
Helix 37	AE1	E	106	119	Right-handed alpha
Helix 38	AE2	E	135	147	Right-handed alpha
Helix 39	AE3	E	168	176	Right-handed alpha
Helix 40	AE4	E	223	233	Right-handed alpha
Helix 41	AE5	E	243	251	Right-handed alpha
Helix 42	AE6	E	265	283	Right-handed alpha
Helix 43	AE7	E	283	305	Right-handed alpha
Helix 44	AE8	E	313	317	Right-handed 310
Helix 45	AE9	E	331	344	Right-handed alpha
Helix 46	AF1	E	351	355	Right-handed 310
Helix 47	AF2	E	364	368	Right-handed 310
Helix 48	AF3	E	369	387	Right-handed alpha
Helix 49	AF4	G	11	16	Right-handed 310
Helix 50	AF5	G	34	42	Right-handed alpha
Helix 51	AF6	G	50	69	Right-handed alpha
Helix 52	AF7	G	81	94	Right-handed alpha
Helix 53	AF8	G	106	119	Right-handed alpha
Helix 54	AF9	G	135	147	Right-handed alpha
Helix 55	AG1	G	168	176	Right-handed alpha
Helix 56	AG2	G	223	233	Right-handed alpha
Helix 57	AG3	G	243	251	Right-handed alpha
Helix 58	AG4	G	265	283	Right-handed alpha
Helix 59	AG5	G	283	305	Right-handed alpha
Helix 60	AG6	G	313	317	Right-handed 310
Helix 61	AG7	G	331	344	Right-handed alpha
Helix 62	AG8	G	351	355	Right-handed 310
Helix 63	AG9	G	364	368	Right-handed 310
Helix 64	AH1	G	369	387	Right-handed alpha
Helix 65	AH2	M	11	16	Right-handed 310
Helix 66	AH3	M	34	42	Right-handed alpha
Helix 67	AH4	M	50	69	Right-handed alpha
Helix 68	AH5	M	81	94	Right-handed alpha
Helix 69	AH6	M	106	119	Right-handed alpha
Helix 70	AH7	M	135	147	Right-handed alpha
Helix 71	AH8	M	168	176	Right-handed alpha
Helix 72	AH9	M	223	231	Right-handed alpha
Helix 73	AI1	M	243	251	Right-handed alpha
Helix 74	AI2	M	265	283	Right-handed alpha
Helix 75	AI3	M	283	305	Right-handed alpha
Helix 76	AI4	M	313	317	Right-handed 310
Helix 77	AI5	M	331	344	Right-handed alpha
Helix 78	AI6	M	351	355	Right-handed 310
Helix 79	AI7	M	364	368	Right-handed 310
Helix 80	AI8	M	369	387	Right-handed alpha
Helix 81	AI9	N	11	16	Right-handed 310
Helix 82	AJ1	N	34	42	Right-handed alpha
Helix 83	AJ2	N	50	69	Right-handed alpha
Helix 84	AJ3	N	81	94	Right-handed alpha
Helix 85	AJ4	N	106	119	Right-handed alpha
Helix 86	AJ5	N	135	147	Right-handed alpha
Helix 87	AJ6	N	168	176	Right-handed alpha
Helix 88	AJ7	N	223	233	Right-handed alpha
Helix 89	AJ8	N	243	251	Right-handed alpha
Helix 90	AJ9	N	265	283	Right-handed alpha
Helix 91	AK1	N	283	305	Right-handed alpha
Helix 92	AK2	N	313	317	Right-handed 310
Helix 93	AK3	N	331	344	Right-handed alpha
Helix 94	AK4	N	351	355	Right-handed 310
Helix 95	AK5	N	364	368	Right-handed 310
Helix 96	AK6	N	369	387	Right-handed alpha
Helix 97	AK7	S	11	16	Right-handed 310
Helix 98	AK8	S	34	42	Right-handed alpha
Helix 99	AK9	S	50	69	Right-handed alpha
Helix 100	AL1	S	81	94	Right-handed alpha
Helix 101	AL2	S	106	119	Right-handed alpha
Helix 102	AL3	S	135	147	Right-handed alpha
Helix 103	AL4	S	168	176	Right-handed alpha
Helix 104	AL5	S	223	233	Right-handed alpha
Helix 105	AL6	S	243	251	Right-handed alpha
Helix 106	AL7	S	265	283	Right-handed alpha
Helix 107	AL8	S	283	305	Right-handed alpha
Helix 108	AL9	S	313	317	Right-handed 310
Helix 109	AM1	S	331	344	Right-handed alpha
Helix 110	AM2	S	351	355	Right-handed 310
Helix 111	AM3	S	364	368	Right-handed 310
Helix 112	AM4	S	369	387	Right-handed alpha
Helix 113	AM5	T	11	16	Right-handed 310
Helix 114	AM6	T	34	42	Right-handed alpha
Helix 115	AM7	T	50	69	Right-handed alpha
Helix 116	AM8	T	81	94	Right-handed alpha
Helix 117	AM9	T	106	119	Right-handed alpha
Helix 118	AN1	T	135	147	Right-handed alpha
Helix 119	AN2	T	168	176	Right-handed alpha
Helix 120	AN3	T	223	233	Right-handed alpha
Helix 121	AN4	T	243	251	Right-handed alpha
Helix 122	AN5	T	265	283	Right-handed alpha
Helix 123	AN6	T	283	305	Right-handed alpha
Helix 124	AN7	T	313	317	Right-handed 310
Helix 125	AN8	T	331	344	Right-handed alpha
Helix 126	AN9	T	351	355	Right-handed 310
Helix 127	AO1	T	364	368	Right-handed 310
Helix 128	AO2	T	369	387	Right-handed alpha

There are 25 sheets in PDB entry 5LUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	345	346	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	78	first strand
Strand 2	A	218	222	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	179	183	parallel
Strand 5	A	150	154	parallel
Strand 6	A	99	104	parallel
Strand 7	A	122	127	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	325	first strand
Strand 2	A	358	362	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	345	346	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	218	222	anti-parallel
Strand 3	B	202	206	anti-parallel
Strand 4	B	179	183	parallel
Strand 5	B	150	154	parallel
Strand 6	B	99	104	parallel
Strand 7	B	122	127	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	325	first strand
Strand 2	B	358	362	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	E	345	346	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	78	first strand
Strand 2	E	218	222	anti-parallel
Strand 3	E	202	206	anti-parallel
Strand 4	E	179	183	parallel
Strand 5	E	150	154	parallel
Strand 6	E	99	104	parallel
Strand 7	E	122	127	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	325	first strand
Strand 2	E	358	362	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	25	first strand
Strand 2	G	345	346	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	78	first strand
Strand 2	G	218	222	anti-parallel
Strand 3	G	202	206	anti-parallel
Strand 4	G	179	183	parallel
Strand 5	G	150	154	parallel
Strand 6	G	99	104	parallel
Strand 7	G	122	127	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	321	325	first strand
Strand 2	G	358	362	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	24	25	first strand
Strand 2	M	345	346	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	75	78	first strand
Strand 2	M	218	222	anti-parallel
Strand 3	M	202	206	anti-parallel
Strand 4	M	179	183	parallel
Strand 5	M	150	154	parallel
Strand 6	M	99	104	parallel
Strand 7	M	122	127	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	156	157	first strand
Strand 2	M	162	163	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	321	325	first strand
Strand 2	M	358	362	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	24	25	first strand
Strand 2	N	345	346	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	74	78	first strand
Strand 2	N	218	222	anti-parallel
Strand 3	N	202	206	anti-parallel
Strand 4	N	179	183	parallel
Strand 5	N	150	154	parallel
Strand 6	N	99	104	parallel
Strand 7	N	122	127	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	321	325	first strand
Strand 2	N	358	362	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	24	25	first strand
Strand 2	S	345	346	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	74	78	first strand
Strand 2	S	218	222	anti-parallel
Strand 3	S	202	206	anti-parallel
Strand 4	S	179	183	parallel
Strand 5	S	150	154	parallel
Strand 6	S	99	104	parallel
Strand 7	S	122	127	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	321	325	first strand
Strand 2	S	358	362	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	24	25	first strand
Strand 2	T	345	346	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	75	78	first strand
Strand 2	T	218	222	anti-parallel
Strand 3	T	202	206	anti-parallel
Strand 4	T	179	183	parallel
Strand 5	T	150	154	parallel
Strand 6	T	99	104	parallel
Strand 7	T	122	127	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	321	325	first strand
Strand 2	T	358	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LUC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LUC