Analysis of interatomic Contacts of Structural Units in PDB entry:
5LUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LUP entry

There are 12 chains in PDB entry 5LUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 364GLU 413
B
 ASP 362THR 412
C
 MET 361VAL 414
D
 ASP 362VAL 414
E
 ASP 362VAL 414
F
 ASP 362GLU 413
G
 ASP 362GLU 413
H
 ASP 362GLU 413
I
 ALA 363GLU 413
J
 ARG 364THR 412
K
 ARG 364GLU 413
L
 ARG 364GLU 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5LUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
364 384Right-handed alpha
Helix 2
AA2
A
387 392Right-handed alpha
Helix 3
AA3
A
396 412Right-handed alpha
Helix 4
AA4
B
363 384Right-handed alpha
Helix 5
AA5
B
387 392Right-handed alpha
Helix 6
AA6
B
396 411Right-handed alpha
Helix 7
AA7
C
362 384Right-handed alpha
Helix 8
AA8
C
387 392Right-handed alpha
Helix 9
AA9
C
398 412Right-handed alpha
Helix 10
AB1
D
364 384Right-handed alpha
Helix 11
AB2
D
387 392Right-handed alpha
Helix 12
AB3
D
396 411Right-handed alpha
Helix 13
AB4
E
363 384Right-handed alpha
Helix 14
AB5
E
387 392Right-handed alpha
Helix 15
AB6
E
396 414Right-handed alpha
Helix 16
AB7
F
363 384Right-handed alpha
Helix 17
AB8
F
387 392Right-handed alpha
Helix 18
AB9
F
398 412Right-handed alpha
Helix 19
AC1
G
364 386Right-handed alpha
Helix 20
AC2
G
387 393Right-handed alpha
Helix 21
AC3
G
396 412Right-handed alpha
Helix 22
AC4
H
363 385Right-handed alpha
Helix 23
AC5
H
387 392Right-handed alpha
Helix 24
AC6
H
396 413Right-handed alpha
Helix 25
AC7
I
364 384Right-handed alpha
Helix 26
AC8
I
387 392Right-handed alpha
Helix 27
AC9
I
398 412Right-handed alpha
Helix 28
AD1
J
365 384Right-handed alpha
Helix 29
AD2
J
387 392Right-handed alpha
Helix 30
AD3
J
396 411Right-handed alpha
Helix 31
AD4
K
365 385Right-handed alpha
Helix 32
AD5
K
387 392Right-handed alpha
Helix 33
AD6
K
396 412Right-handed alpha
Helix 34
AD7
L
365 385Right-handed alpha
Helix 35
AD8
L
387 393Right-handed alpha
Helix 36
AD9
L
396 411Right-handed alpha
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There are no sheets in PDB entry 5LUP
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