Analysis of interatomic Contacts of Structural Units in PDB entry:
5LV2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LV2 entry

There are 2 chains in PDB entry 5LV2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 136	THR 478
B	ARG 135	VAL 419

There are126 helices in PDB entry 5LV2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	136	142	Right-handed alpha
Helix 2	AA2	A	143	154	Right-handed alpha
Helix 3	AA3	A	156	165	Right-handed alpha
Helix 4	AA4	A	166	179	Right-handed alpha
Helix 5	AA5	A	180	184	Right-handed 310
Helix 6	AA6	A	197	206	Right-handed alpha
Helix 7	AA7	A	218	230	Right-handed alpha
Helix 8	AA8	A	265	267	Right-handed 310
Helix 9	AA9	A	268	276	Right-handed alpha
Helix 10	AB1	A	300	312	Right-handed alpha
Helix 11	AB2	A	313	315	Right-handed 310
Helix 12	AB3	A	318	322	Right-handed 310
Helix 13	AB4	A	324	326	Right-handed 310
Helix 14	AB5	A	327	337	Right-handed alpha
Helix 15	AB6	A	345	349	Right-handed 310
Helix 16	AB7	A	364	368	Right-handed 310
Helix 17	AB8	B	136	142	Right-handed alpha
Helix 18	AB9	B	143	154	Right-handed alpha
Helix 19	AC1	B	156	165	Right-handed alpha
Helix 20	AC2	B	166	179	Right-handed alpha
Helix 21	AC3	B	180	184	Right-handed 310
Helix 22	AC4	B	197	206	Right-handed alpha
Helix 23	AC5	B	218	230	Right-handed alpha
Helix 24	AC6	B	265	268	Right-handed 310
Helix 25	AC7	B	269	276	Right-handed alpha
Helix 26	AC8	B	300	312	Right-handed alpha
Helix 27	AC9	B	313	316	Right-handed 310
Helix 28	AD1	B	318	322	Right-handed 310
Helix 29	AD2	B	324	326	Right-handed 310
Helix 30	AD3	B	327	337	Right-handed alpha
Helix 31	AD4	B	345	349	Right-handed 310
Helix 32	AD5	B	364	368	Right-handed 310
Helix 33	AD6	C	137	142	Right-handed alpha
Helix 34	AD7	C	143	154	Right-handed alpha
Helix 35	AD8	C	156	165	Right-handed alpha
Helix 36	AD9	C	166	179	Right-handed alpha
Helix 37	AE1	C	180	184	Right-handed 310
Helix 38	AE2	C	197	206	Right-handed alpha
Helix 39	AE3	C	218	230	Right-handed alpha
Helix 40	AE4	C	265	268	Right-handed 310
Helix 41	AE5	C	269	276	Right-handed alpha
Helix 42	AE6	C	300	312	Right-handed alpha
Helix 43	AE7	C	313	315	Right-handed 310
Helix 44	AE8	C	324	326	Right-handed 310
Helix 45	AE9	C	327	337	Right-handed alpha
Helix 46	AF1	C	345	349	Right-handed 310
Helix 47	AF2	C	364	368	Right-handed 310
Helix 48	AF3	D	137	142	Right-handed alpha
Helix 49	AF4	D	143	154	Right-handed alpha
Helix 50	AF5	D	156	165	Right-handed alpha
Helix 51	AF6	D	166	179	Right-handed alpha
Helix 52	AF7	D	180	184	Right-handed 310
Helix 53	AF8	D	197	206	Right-handed alpha
Helix 54	AF9	D	218	230	Right-handed alpha
Helix 55	AG1	D	265	268	Right-handed 310
Helix 56	AG2	D	269	276	Right-handed alpha
Helix 57	AG3	D	300	312	Right-handed alpha
Helix 58	AG4	D	313	316	Right-handed 310
Helix 59	AG5	D	318	322	Right-handed 310
Helix 60	AG6	D	324	326	Right-handed 310
Helix 61	AG7	D	327	337	Right-handed alpha
Helix 62	AG8	D	345	349	Right-handed 310
Helix 63	AG9	D	364	368	Right-handed 310
Helix 64	AH1	E	137	142	Right-handed alpha
Helix 65	AH2	E	143	154	Right-handed alpha
Helix 66	AH3	E	156	165	Right-handed alpha
Helix 67	AH4	E	166	179	Right-handed alpha
Helix 68	AH5	E	180	184	Right-handed 310
Helix 69	AH6	E	197	206	Right-handed alpha
Helix 70	AH7	E	218	230	Right-handed alpha
Helix 71	AH8	E	265	268	Right-handed 310
Helix 72	AH9	E	269	276	Right-handed alpha
Helix 73	AI1	E	300	312	Right-handed alpha
Helix 74	AI2	E	313	315	Right-handed 310
Helix 75	AI3	E	324	326	Right-handed 310
Helix 76	AI4	E	327	337	Right-handed alpha
Helix 77	AI5	E	345	349	Right-handed 310
Helix 78	AI6	E	364	368	Right-handed 310
Helix 79	AI7	F	136	142	Right-handed alpha
Helix 80	AI8	F	143	154	Right-handed alpha
Helix 81	AI9	F	156	165	Right-handed alpha
Helix 82	AJ1	F	166	179	Right-handed alpha
Helix 83	AJ2	F	180	184	Right-handed 310
Helix 84	AJ3	F	197	206	Right-handed alpha
Helix 85	AJ4	F	218	230	Right-handed alpha
Helix 86	AJ5	F	265	268	Right-handed 310
Helix 87	AJ6	F	269	276	Right-handed alpha
Helix 88	AJ7	F	300	312	Right-handed alpha
Helix 89	AJ8	F	313	316	Right-handed 310
Helix 90	AJ9	F	318	322	Right-handed 310
Helix 91	AK1	F	324	326	Right-handed 310
Helix 92	AK2	F	327	337	Right-handed alpha
Helix 93	AK3	F	345	349	Right-handed 310
Helix 94	AK4	F	364	368	Right-handed 310
Helix 95	AK5	G	137	142	Right-handed alpha
Helix 96	AK6	G	143	154	Right-handed alpha
Helix 97	AK7	G	156	165	Right-handed alpha
Helix 98	AK8	G	166	179	Right-handed alpha
Helix 99	AK9	G	180	184	Right-handed 310
Helix 100	AL1	G	197	206	Right-handed alpha
Helix 101	AL2	G	218	230	Right-handed alpha
Helix 102	AL3	G	265	268	Right-handed 310
Helix 103	AL4	G	269	276	Right-handed alpha
Helix 104	AL5	G	300	312	Right-handed alpha
Helix 105	AL6	G	313	315	Right-handed 310
Helix 106	AL7	G	318	322	Right-handed 310
Helix 107	AL8	G	324	326	Right-handed 310
Helix 108	AL9	G	327	337	Right-handed alpha
Helix 109	AM1	G	345	349	Right-handed 310
Helix 110	AM2	G	364	368	Right-handed 310
Helix 111	AM3	H	137	142	Right-handed alpha
Helix 112	AM4	H	143	154	Right-handed alpha
Helix 113	AM5	H	156	165	Right-handed alpha
Helix 114	AM6	H	166	179	Right-handed alpha
Helix 115	AM7	H	180	184	Right-handed 310
Helix 116	AM8	H	197	206	Right-handed alpha
Helix 117	AM9	H	218	230	Right-handed alpha
Helix 118	AN1	H	265	268	Right-handed 310
Helix 119	AN2	H	269	276	Right-handed alpha
Helix 120	AN3	H	300	312	Right-handed alpha
Helix 121	AN4	H	313	316	Right-handed 310
Helix 122	AN5	H	318	322	Right-handed 310
Helix 123	AN6	H	324	326	Right-handed 310
Helix 124	AN7	H	327	337	Right-handed alpha
Helix 125	AN8	H	345	349	Right-handed 310
Helix 126	AN9	H	364	368	Right-handed 310

There are 33 sheets in PDB entry 5LV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	240	first strand
Strand 2	A	210	215	parallel
Strand 3	A	188	192	parallel
Strand 4	A	252	257	parallel
Strand 5	A	280	287	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	359	first strand
Strand 2	A	290	298	anti-parallel
Strand 3	A	383	397	anti-parallel
Strand 4	A	402	406	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	359	first strand
Strand 2	A	290	298	anti-parallel
Strand 3	A	383	397	anti-parallel
Strand 4	A	418	429	anti-parallel
Strand 5	A	340	342	anti-parallel
Strand 6	A	474	475	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	378	first strand
Strand 2	A	434	444	anti-parallel
Strand 3	A	448	457	anti-parallel
Strand 4	A	463	469	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	B	210	215	parallel
Strand 3	B	188	192	parallel
Strand 4	B	252	257	parallel
Strand 5	B	280	287	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	359	first strand
Strand 2	B	290	298	anti-parallel
Strand 3	B	383	397	anti-parallel
Strand 4	B	402	406	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	359	first strand
Strand 2	B	290	298	anti-parallel
Strand 3	B	383	397	anti-parallel
Strand 4	B	418	429	anti-parallel
Strand 5	B	340	342	anti-parallel
Strand 6	B	474	475	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	378	first strand
Strand 2	B	434	443	anti-parallel
Strand 3	B	449	457	anti-parallel
Strand 4	B	463	469	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	240	first strand
Strand 2	C	210	215	parallel
Strand 3	C	188	192	parallel
Strand 4	C	252	257	parallel
Strand 5	C	280	287	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	359	first strand
Strand 2	C	290	298	anti-parallel
Strand 3	C	383	397	anti-parallel
Strand 4	C	402	406	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	359	first strand
Strand 2	C	290	298	anti-parallel
Strand 3	C	383	397	anti-parallel
Strand 4	C	418	429	anti-parallel
Strand 5	C	340	342	anti-parallel
Strand 6	C	474	475	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	378	first strand
Strand 2	C	434	444	anti-parallel
Strand 3	C	448	457	anti-parallel
Strand 4	C	463	469	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	240	first strand
Strand 2	D	210	215	parallel
Strand 3	D	188	192	parallel
Strand 4	D	252	257	parallel
Strand 5	D	280	287	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	359	first strand
Strand 2	D	290	298	anti-parallel
Strand 3	D	383	397	anti-parallel
Strand 4	D	402	406	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	359	first strand
Strand 2	D	290	298	anti-parallel
Strand 3	D	383	397	anti-parallel
Strand 4	D	418	429	anti-parallel
Strand 5	D	340	342	anti-parallel
Strand 6	D	474	475	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	378	first strand
Strand 2	D	434	443	anti-parallel
Strand 3	D	449	457	anti-parallel
Strand 4	D	463	469	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	240	first strand
Strand 2	E	210	215	parallel
Strand 3	E	188	192	parallel
Strand 4	E	252	257	parallel
Strand 5	E	280	287	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	359	first strand
Strand 2	E	290	298	anti-parallel
Strand 3	E	383	397	anti-parallel
Strand 4	E	402	406	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	359	first strand
Strand 2	E	290	298	anti-parallel
Strand 3	E	383	397	anti-parallel
Strand 4	E	418	429	anti-parallel
Strand 5	E	340	342	anti-parallel
Strand 6	E	474	475	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	378	first strand
Strand 2	E	434	444	anti-parallel
Strand 3	E	448	457	anti-parallel
Strand 4	E	463	464	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	378	first strand
Strand 2	E	434	444	anti-parallel
Strand 3	E	448	457	anti-parallel
Strand 4	E	467	469	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	240	first strand
Strand 2	F	210	215	parallel
Strand 3	F	188	192	parallel
Strand 4	F	252	257	parallel
Strand 5	F	280	287	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	359	first strand
Strand 2	F	290	298	anti-parallel
Strand 3	F	383	397	anti-parallel
Strand 4	F	402	406	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	359	first strand
Strand 2	F	290	298	anti-parallel
Strand 3	F	383	397	anti-parallel
Strand 4	F	418	429	anti-parallel
Strand 5	F	340	342	anti-parallel
Strand 6	F	474	475	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	370	378	first strand
Strand 2	F	434	443	anti-parallel
Strand 3	F	449	457	anti-parallel
Strand 4	F	463	469	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	240	first strand
Strand 2	G	210	215	parallel
Strand 3	G	188	192	parallel
Strand 4	G	252	257	parallel
Strand 5	G	280	287	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	359	first strand
Strand 2	G	290	298	anti-parallel
Strand 3	G	383	397	anti-parallel
Strand 4	G	402	406	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	359	first strand
Strand 2	G	290	298	anti-parallel
Strand 3	G	383	397	anti-parallel
Strand 4	G	418	429	anti-parallel
Strand 5	G	340	342	anti-parallel
Strand 6	G	474	475	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	370	378	first strand
Strand 2	G	434	444	anti-parallel
Strand 3	G	448	457	anti-parallel
Strand 4	G	463	469	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	236	240	first strand
Strand 2	H	210	215	parallel
Strand 3	H	188	192	parallel
Strand 4	H	252	257	parallel
Strand 5	H	280	287	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	354	359	first strand
Strand 2	H	290	298	anti-parallel
Strand 3	H	383	397	anti-parallel
Strand 4	H	402	406	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	354	359	first strand
Strand 2	H	290	298	anti-parallel
Strand 3	H	383	397	anti-parallel
Strand 4	H	418	429	anti-parallel
Strand 5	H	340	342	anti-parallel
Strand 6	H	474	475	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	370	378	first strand
Strand 2	H	434	444	anti-parallel
Strand 3	H	448	457	anti-parallel
Strand 4	H	463	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LV2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LV2