Analysis of interatomic Contacts of Structural Units in PDB entry:
5LV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LV5 entry

There is 1 chain in PDB entry 5LV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 56GLU 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5LV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 65Right-handed alpha
Helix 2
AA2
A
66 79Right-handed alpha
Helix 3
AA3
A
80 85Right-handed alpha
Helix 4
AA4
A
97 106Right-handed alpha
Helix 5
AA5
A
119 130Right-handed alpha
Helix 6
AA6
A
169 180Right-handed alpha
Helix 7
AA7
A
201 210Right-handed alpha
Helix 8
AA8
A
213 219Right-handed alpha
Helix 9
AA9
A
223 235Right-handed alpha
Helix 10
AB1
A
245 249Right-handed 310
Helix 11
AB2
A
265 273Right-handed alpha
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There are 3 sheets in PDB entry 5LV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
110 115parallel
Strand 3
A
88 92parallel
Strand 4
A
152 157parallel
Strand 5
A
181 188parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 260first strand
Strand 2
A
191 199anti-parallel
Strand 3
A
286 299anti-parallel
Strand 4
A
323 334anti-parallel
Strand 5
A
238 242anti-parallel
Strand 6
A
370 376parallel
Strand 7
A
356 364anti-parallel
Strand 8
A
339 348anti-parallel
Strand 9
A
274 281anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 260first strand
Strand 2
A
191 199anti-parallel
Strand 3
A
286 299anti-parallel
Strand 4
A
308 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il