Analysis of interatomic Contacts of Structural Units in PDB entry:
5LV9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LV9 entry

There are 2 chains in PDB entry 5LV9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASP 510
B	LEU 2	GLN 514

There are 41 helices in PDB entry 5LV9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	26	Right-handed alpha
Helix 2	AA2	A	27	29	Right-handed 310
Helix 3	AA3	A	51	60	Right-handed alpha
Helix 4	AA4	A	62	67	Right-handed alpha
Helix 5	AA5	A	68	71	Right-handed 310
Helix 6	AA6	A	105	113	Right-handed alpha
Helix 7	AA7	A	117	123	Right-handed alpha
Helix 8	AA8	A	123	131	Right-handed alpha
Helix 9	AA9	A	158	163	Right-handed alpha
Helix 10	AB1	A	176	190	Right-handed alpha
Helix 11	AB2	A	230	234	Right-handed 310
Helix 12	AB3	A	268	272	Right-handed 310
Helix 13	AB4	A	306	319	Right-handed alpha
Helix 14	AB5	A	320	323	Right-handed 310
Helix 15	AB6	A	356	360	Right-handed 310
Helix 16	AB7	A	361	376	Right-handed alpha
Helix 17	AB8	A	383	412	Right-handed alpha
Helix 18	AB9	A	417	423	Right-handed alpha
Helix 19	AC1	A	429	440	Right-handed alpha
Helix 20	AC2	A	457	469	Right-handed alpha
Helix 21	AC3	A	476	481	Right-handed 310
Helix 22	AC4	A	484	505	Right-handed alpha
Helix 23	AC5	B	10	25	Right-handed alpha
Helix 24	AC6	B	51	60	Right-handed alpha
Helix 25	AC7	B	62	71	Right-handed alpha
Helix 26	AC8	B	105	113	Right-handed alpha
Helix 27	AC9	B	117	123	Right-handed alpha
Helix 28	AD1	B	123	131	Right-handed alpha
Helix 29	AD2	B	158	163	Right-handed alpha
Helix 30	AD3	B	176	189	Right-handed alpha
Helix 31	AD4	B	230	234	Right-handed 310
Helix 32	AD5	B	268	272	Right-handed 310
Helix 33	AD6	B	306	319	Right-handed alpha
Helix 34	AD7	B	320	323	Right-handed 310
Helix 35	AD8	B	361	376	Right-handed alpha
Helix 36	AD9	B	383	411	Right-handed alpha
Helix 37	AE1	B	417	423	Right-handed alpha
Helix 38	AE2	B	429	440	Right-handed alpha
Helix 39	AE3	B	457	469	Right-handed alpha
Helix 40	AE4	B	476	482	Right-handed 310
Helix 41	AE5	B	483	505	Right-handed alpha

There are 12 sheets in PDB entry 5LV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	30	35	parallel
Strand 3	A	4	8	parallel
Strand 4	A	225	228	parallel
Strand 5	A	345	347	parallel
Strand 6	A	341	342	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	171	175	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	77	81	anti-parallel
Strand 3	A	275	279	parallel
Strand 4	A	283	289	anti-parallel
Strand 5	A	294	300	anti-parallel
Strand 6	A	256	262	anti-parallel
Strand 7	A	328	331	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	103	104	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	204	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	220	222	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	247	first strand
Strand 2	A	335	337	anti-parallel
Strand 3	A	353	354	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	196	first strand
Strand 2	B	30	35	parallel
Strand 3	B	4	8	parallel
Strand 4	B	225	228	parallel
Strand 5	B	345	347	parallel
Strand 6	B	341	342	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	171	175	anti-parallel
Strand 3	B	73	75	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	77	81	anti-parallel
Strand 3	B	275	280	parallel
Strand 4	B	283	289	anti-parallel
Strand 5	B	294	300	anti-parallel
Strand 6	B	256	262	anti-parallel
Strand 7	B	328	331	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	103	104	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	204	first strand
Strand 2	B	210	215	anti-parallel
Strand 3	B	220	222	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	247	first strand
Strand 2	B	335	337	anti-parallel
Strand 3	B	353	354	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LV9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LV9