Analysis of interatomic Contacts of Structural Units in PDB entry:
5LVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LVC entry

There are 3 chains in PDB entry 5LVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 ASP 31PRO 235
b
 ASN 12GLN 370
c
 HIS 1GLN 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5LVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
42 47Right-handed alpha
Helix 2
AA2
a
76 81Right-handed alpha
Helix 3
AA3
a
88 94Right-handed alpha
Helix 4
AA4
a
135 140Right-handed alpha
Helix 5
AA5
b
167 171Right-handed 310
Helix 6
AA6
b
212 217Right-handed alpha
Helix 7
AA7
b
228 235Right-handed alpha
Helix 8
AA8
b
238 245Right-handed alpha
Helix 9
AA9
b
279 288Right-handed alpha
Helix 10
AB1
b
289 294Right-handed 310
Helix 11
AB2
c
44 50Right-handed alpha
Helix 12
AB3
c
84 92Right-handed alpha
Helix 13
AB4
c
130 135Right-handed alpha
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There are 9 sheets in PDB entry 5LVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
63 66first strand
Strand 2
a
211 221anti-parallel
Strand 3
a
102 110anti-parallel
Strand 4
a
154 161anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
71 74first strand
Strand 2
a
195 201anti-parallel
Strand 3
a
117 124anti-parallel
Strand 4
a
143 149anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
98 100first strand
Strand 2
a
224 226anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
225 227first strand
Strand 2
b
328 336anti-parallel
Strand 3
b
269 276anti-parallel
Strand 4
b
295 300anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
249 251first strand
Strand 2
b
360 362anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
306 311first strand
Strand 2
b
253 259anti-parallel
Strand 3
b
347 357anti-parallel
Strand 4
b
174 183anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
95 97first strand
Strand 2
c
211 213anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
149 154first strand
Strand 2
c
100 106anti-parallel
Strand 3
c
200 206anti-parallel
Strand 4
c
53 57anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
138 143first strand
Strand 2
c
115 122anti-parallel
Strand 3
c
178 186anti-parallel
Strand 4
c
68 73anti-parallel
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