Analysis of interatomic Contacts of Structural Units in PDB entry:
5LVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LVF entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 5LVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 142
B
 PRO 143PRO 147
B
 SER 149SER 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5LVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 13Right-handed alpha
Helix 2
AA2
A
18 32Right-handed alpha
Helix 3
AA3
A
35 49Right-handed alpha
Helix 4
AA4
A
53 74Right-handed alpha
Helix 5
AA5
A
76 95Right-handed alpha
Helix 6
AA6
A
99 117Right-handed alpha
Helix 7
AA7
A
120 134Right-handed alpha
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There are no sheets in PDB entry 5LVF
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il