Analysis of interatomic Contacts of Structural Units in PDB entry:
5LVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LVP entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 16 chains in PDB entry 5LVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 75	ASN 240
A	PHE 242	THR 359
B	PRO 74	SER 231
B	PHE 242	THR 359
C	ARG 75	ASN 240
C	PHE 242	THR 359
D	PRO 74	ASN 240
D	PHE 242	THR 359
E	PHE 8	PHE 11
E	TYR 13	SER 14
F	PHE 8	PHE 11
F	TYR 13	ALA 15
G	PHE 8	PHE 11
G	TYR 13	ALA 15
H	PHE 8	PHE 11
H	TYR 13	SER 14

There are 62 helices in PDB entry 5LVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	80	Right-handed 310
Helix 2	AA2	A	115	121	Right-handed alpha
Helix 3	AA3	A	123	136	Right-handed alpha
Helix 4	AA4	A	166	175	Right-handed alpha
Helix 5	AA5	A	178	199	Right-handed alpha
Helix 6	AA6	A	207	209	Right-handed 310
Helix 7	AA7	A	245	249	Right-handed 310
Helix 8	AA8	A	250	257	Right-handed alpha
Helix 9	AA9	A	260	278	Right-handed alpha
Helix 10	AB1	A	286	297	Right-handed alpha
Helix 11	AB2	A	306	315	Right-handed alpha
Helix 12	AB3	A	327	331	Right-handed 310
Helix 13	AB4	A	332	338	Right-handed alpha
Helix 14	AB5	A	339	343	Right-handed 310
Helix 15	AB6	A	346	353	Right-handed 310
Helix 16	AB7	B	78	80	Right-handed 310
Helix 17	AB8	B	115	120	Right-handed alpha
Helix 18	AB9	B	123	136	Right-handed alpha
Helix 19	AC1	B	166	175	Right-handed alpha
Helix 20	AC2	B	178	199	Right-handed alpha
Helix 21	AC3	B	207	209	Right-handed 310
Helix 22	AC4	B	245	249	Right-handed 310
Helix 23	AC5	B	252	257	Right-handed alpha
Helix 24	AC6	B	260	278	Right-handed alpha
Helix 25	AC7	B	286	297	Right-handed alpha
Helix 26	AC8	B	306	315	Right-handed alpha
Helix 27	AC9	B	320	324	Right-handed 310
Helix 28	AD1	B	327	331	Right-handed 310
Helix 29	AD2	B	332	338	Right-handed alpha
Helix 30	AD3	B	339	343	Right-handed 310
Helix 31	AD4	B	349	353	Right-handed 310
Helix 32	AD5	C	78	80	Right-handed 310
Helix 33	AD6	C	115	121	Right-handed alpha
Helix 34	AD7	C	123	136	Right-handed alpha
Helix 35	AD8	C	166	175	Right-handed alpha
Helix 36	AD9	C	178	199	Right-handed alpha
Helix 37	AE1	C	207	209	Right-handed 310
Helix 38	AE2	C	245	249	Right-handed 310
Helix 39	AE3	C	252	257	Right-handed alpha
Helix 40	AE4	C	260	278	Right-handed alpha
Helix 41	AE5	C	286	296	Right-handed alpha
Helix 42	AE6	C	306	317	Right-handed alpha
Helix 43	AE7	C	320	324	Right-handed 310
Helix 44	AE8	C	327	331	Right-handed 310
Helix 45	AE9	C	332	338	Right-handed alpha
Helix 46	AF1	C	339	343	Right-handed 310
Helix 47	AF2	C	346	353	Right-handed 310
Helix 48	AF3	D	78	80	Right-handed 310
Helix 49	AF4	D	115	121	Right-handed alpha
Helix 50	AF5	D	123	136	Right-handed alpha
Helix 51	AF6	D	166	175	Right-handed alpha
Helix 52	AF7	D	178	199	Right-handed alpha
Helix 53	AF8	D	245	249	Right-handed 310
Helix 54	AF9	D	252	257	Right-handed alpha
Helix 55	AG1	D	260	278	Right-handed alpha
Helix 56	AG2	D	286	296	Right-handed alpha
Helix 57	AG3	D	306	317	Right-handed alpha
Helix 58	AG4	D	320	324	Right-handed 310
Helix 59	AG5	D	327	331	Right-handed 310
Helix 60	AG6	D	332	338	Right-handed alpha
Helix 61	AG7	D	339	343	Right-handed 310
Helix 62	AG8	D	346	353	Right-handed 310

There are 12 sheets in PDB entry 5LVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	91	first strand
Strand 2	A	94	101	anti-parallel
Strand 3	A	107	114	anti-parallel
Strand 4	A	154	159	anti-parallel
Strand 5	A	145	150	anti-parallel
Strand 6	F	13	14	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	228	229	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	213	first strand
Strand 2	A	219	221	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	89	first strand
Strand 2	B	95	101	anti-parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	154	159	anti-parallel
Strand 5	B	145	150	anti-parallel
Strand 6	G	13	14	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	228	229	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	219	221	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	89	first strand
Strand 2	C	94	101	anti-parallel
Strand 3	C	107	114	anti-parallel
Strand 4	C	154	159	anti-parallel
Strand 5	C	145	150	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	228	229	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	219	221	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	91	first strand
Strand 2	D	94	101	anti-parallel
Strand 3	D	107	114	anti-parallel
Strand 4	D	154	159	anti-parallel
Strand 5	D	145	150	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	228	229	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	213	first strand
Strand 2	D	219	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LVP