Analysis of interatomic Contacts of Structural Units in PDB entry:
5LVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LVU entry

There is 1 chain in PDB entry 5LVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5LEU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5LVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 29Right-handed alpha
Helix 2
AA2
A
29 37Right-handed alpha
Helix 3
AA3
A
40 51Right-handed alpha
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
67 82Right-handed alpha
Helix 6
AA6
A
82 99Right-handed alpha
Helix 7
AA7
A
100 102Right-handed 310
Helix 8
AA8
A
103 112Right-handed alpha
Helix 9
AA9
A
147 151Right-handed 310
Helix 10
AB1
A
178 180Right-handed 310
Helix 11
AB2
A
191 195Right-handed 310
Helix 12
AB3
A
214 218Right-handed alpha
Helix 13
AB4
A
220 225Right-handed 310
Helix 14
AB5
A
229 234Right-handed 310
Helix 15
AB6
A
235 263Right-handed alpha
Helix 16
AB7
A
264 266Right-handed 310
Helix 17
AB8
A
275 278Right-handed 310
Helix 18
AB9
A
279 314Right-handed alpha
Helix 19
AC1
A
318 348Right-handed alpha
Helix 20
AC2
A
349 353Right-handed 310
Helix 21
AC3
A
356 370Right-handed alpha
Helix 22
AC4
A
371 374Right-handed 310
Helix 23
AC5
A
375 387Right-handed alpha
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There are 2 sheets in PDB entry 5LVU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
153 161parallel
Strand 3
A
127 132parallel
Strand 4
A
135 145anti-parallel
Strand 5
A
197 207anti-parallel
Strand 6
A
181 183anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
153 161parallel
Strand 3
A
167 176anti-parallel
Strand 4
A
211 213anti-parallel
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