Analysis of interatomic Contacts of Structural Units in PDB entry:
5LW0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LW0 entry

There are 2 chains in PDB entry 5LW0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 95GLN 296
B
 SER 93GLN 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5LW0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 100Right-handed 310
Helix 2
AA2
A
116 135Right-handed alpha
Helix 3
AA3
A
149 162Right-handed alpha
Helix 4
AA4
A
203 214Right-handed alpha
Helix 5
AA5
A
214 225Right-handed alpha
Helix 6
AA6
A
242 249Right-handed alpha
Helix 7
AA7
A
272 296Right-handed alpha
Helix 8
AA8
B
97 100Right-handed 310
Helix 9
AA9
B
116 135Right-handed alpha
Helix 10
AB1
B
149 162Right-handed alpha
Helix 11
AB2
B
203 214Right-handed alpha
Helix 12
AB3
B
214 225Right-handed alpha
Helix 13
AB4
B
242 249Right-handed alpha
Helix 14
AB5
B
272 296Right-handed alpha
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There are 2 sheets in PDB entry 5LW0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
139 144parallel
Strand 3
A
102 105parallel
Strand 4
A
189 193parallel
Strand 5
A
252 257parallel
Strand 6
A
232 237anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 173first strand
Strand 2
B
139 144parallel
Strand 3
B
102 105parallel
Strand 4
B
189 193parallel
Strand 5
B
252 256parallel
Strand 6
B
233 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il