Analysis of interatomic Contacts of Structural Units in PDB entry:
5LW1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LW1 entry

There are 5 chains in PDB entry 5LW1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 6	ALA 325
B	ASN 8	ASP 362
C	PRO 154	LEU 162
D	ASP 13	ALA 325
E	ASN 8	GLU 285

There are111 helices in PDB entry 5LW1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	24	Right-handed alpha
Helix 2	AA2	A	26	36	Right-handed alpha
Helix 3	AA3	A	49	58	Right-handed alpha
Helix 4	AA4	A	59	69	Right-handed alpha
Helix 5	AA5	A	82	91	Right-handed alpha
Helix 6	AA6	A	92	102	Right-handed alpha
Helix 7	AA7	A	115	123	Right-handed alpha
Helix 8	AA8	A	125	135	Right-handed alpha
Helix 9	AA9	A	148	156	Right-handed alpha
Helix 10	AB1	A	158	182	Right-handed alpha
Helix 11	AB2	A	183	193	Right-handed alpha
Helix 12	AB3	A	206	215	Right-handed alpha
Helix 13	AB4	A	216	226	Right-handed alpha
Helix 14	AB5	A	239	248	Right-handed alpha
Helix 15	AB6	A	249	259	Right-handed alpha
Helix 16	AB7	A	272	280	Right-handed alpha
Helix 17	AB8	A	282	292	Right-handed alpha
Helix 18	AB9	A	305	313	Right-handed alpha
Helix 19	AC1	A	315	325	Right-handed alpha
Helix 20	AC2	B	60	62	Right-handed 310
Helix 21	AC3	B	63	80	Right-handed alpha
Helix 22	AC4	B	115	121	Right-handed alpha
Helix 23	AC5	B	124	145	Right-handed alpha
Helix 24	AC6	B	153	155	Right-handed 310
Helix 25	AC7	B	187	192	Right-handed 310
Helix 26	AC8	B	193	198	Right-handed alpha
Helix 27	AC9	B	205	221	Right-handed alpha
Helix 28	AD1	B	231	242	Right-handed alpha
Helix 29	AD2	B	245	250	Right-handed alpha
Helix 30	AD3	B	253	262	Right-handed alpha
Helix 31	AD4	B	270	275	Right-handed alpha
Helix 32	AD5	B	276	280	Right-handed 310
Helix 33	AD6	B	290	302	Right-handed alpha
Helix 34	AD7	B	311	317	Right-handed alpha
Helix 35	AD8	B	321	325	Right-handed 310
Helix 36	AD9	B	326	331	Right-handed alpha
Helix 37	AE1	B	348	362	Right-handed alpha
Helix 38	AE2	D	14	24	Right-handed alpha
Helix 39	AE3	D	26	36	Right-handed alpha
Helix 40	AE4	D	49	58	Right-handed alpha
Helix 41	AE5	D	59	69	Right-handed alpha
Helix 42	AE6	D	82	91	Right-handed alpha
Helix 43	AE7	D	92	102	Right-handed alpha
Helix 44	AE8	D	115	123	Right-handed alpha
Helix 45	AE9	D	125	135	Right-handed alpha
Helix 46	AF1	D	148	156	Right-handed alpha
Helix 47	AF2	D	158	182	Right-handed alpha
Helix 48	AF3	D	183	193	Right-handed alpha
Helix 49	AF4	D	206	215	Right-handed alpha
Helix 50	AF5	D	216	226	Right-handed alpha
Helix 51	AF6	D	239	248	Right-handed alpha
Helix 52	AF7	D	249	259	Right-handed alpha
Helix 53	AF8	D	272	280	Right-handed alpha
Helix 54	AF9	D	282	292	Right-handed alpha
Helix 55	AG1	D	305	313	Right-handed alpha
Helix 56	AG2	D	315	324	Right-handed alpha
Helix 57	AG3	E	60	62	Right-handed 310
Helix 58	AG4	E	63	80	Right-handed alpha
Helix 59	AG5	E	115	121	Right-handed alpha
Helix 60	AG6	E	124	145	Right-handed alpha
Helix 61	AG7	E	153	155	Right-handed 310
Helix 62	AG8	E	187	192	Right-handed 310
Helix 63	AG9	E	193	198	Right-handed alpha
Helix 64	AH1	E	205	221	Right-handed alpha
Helix 65	AH2	E	231	242	Right-handed alpha
Helix 66	AH3	E	245	250	Right-handed alpha
Helix 67	AH4	E	253	262	Right-handed alpha
Helix 68	AH5	E	270	275	Right-handed alpha
Helix 69	AH6	E	276	280	Right-handed 310
Helix 70	AH7	E	290	302	Right-handed alpha
Helix 71	AH8	E	311	317	Right-handed alpha
Helix 72	AH9	E	321	325	Right-handed 310
Helix 73	AI1	E	326	331	Right-handed alpha
Helix 74	AI2	E	348	362	Right-handed alpha
Helix 75	AI3	G	14	24	Right-handed alpha
Helix 76	AI4	G	26	36	Right-handed alpha
Helix 77	AI5	G	49	58	Right-handed alpha
Helix 78	AI6	G	59	69	Right-handed alpha
Helix 79	AI7	G	82	91	Right-handed alpha
Helix 80	AI8	G	92	102	Right-handed alpha
Helix 81	AI9	G	115	123	Right-handed alpha
Helix 82	AJ1	G	125	135	Right-handed alpha
Helix 83	AJ2	G	148	157	Right-handed alpha
Helix 84	AJ3	G	158	182	Right-handed alpha
Helix 85	AJ4	G	183	193	Right-handed alpha
Helix 86	AJ5	G	206	215	Right-handed alpha
Helix 87	AJ6	G	216	226	Right-handed alpha
Helix 88	AJ7	G	239	248	Right-handed alpha
Helix 89	AJ8	G	249	259	Right-handed alpha
Helix 90	AJ9	G	272	280	Right-handed alpha
Helix 91	AK1	G	282	292	Right-handed alpha
Helix 92	AK2	G	305	313	Right-handed alpha
Helix 93	AK3	G	315	325	Right-handed alpha
Helix 94	AK4	H	60	62	Right-handed 310
Helix 95	AK5	H	63	80	Right-handed alpha
Helix 96	AK6	H	115	121	Right-handed alpha
Helix 97	AK7	H	124	145	Right-handed alpha
Helix 98	AK8	H	187	192	Right-handed 310
Helix 99	AK9	H	193	198	Right-handed alpha
Helix 100	AL1	H	203	205	Right-handed 310
Helix 101	AL2	H	206	221	Right-handed alpha
Helix 102	AL3	H	231	242	Right-handed alpha
Helix 103	AL4	H	245	250	Right-handed alpha
Helix 104	AL5	H	253	262	Right-handed alpha
Helix 105	AL6	H	270	275	Right-handed alpha
Helix 106	AL7	H	276	280	Right-handed 310
Helix 107	AL8	H	290	302	Right-handed alpha
Helix 108	AL9	H	311	317	Right-handed alpha
Helix 109	AM1	H	321	325	Right-handed 310
Helix 110	AM2	H	326	331	Right-handed alpha
Helix 111	AM3	H	348	362	Right-handed alpha

There are 9 sheets in PDB entry 5LW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	15	first strand
Strand 2	B	18	23	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	34	first strand
Strand 2	B	39	45	anti-parallel
Strand 3	B	50	58	anti-parallel
Strand 4	B	103	109	anti-parallel
Strand 5	B	88	92	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	157	159	anti-parallel
Strand 3	B	165	167	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	15	first strand
Strand 2	E	18	23	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	34	first strand
Strand 2	E	39	45	anti-parallel
Strand 3	E	50	58	anti-parallel
Strand 4	E	103	109	anti-parallel
Strand 5	E	88	92	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	114	first strand
Strand 2	E	157	159	anti-parallel
Strand 3	E	165	167	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	15	first strand
Strand 2	H	18	23	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	34	first strand
Strand 2	H	39	45	anti-parallel
Strand 3	H	50	58	anti-parallel
Strand 4	H	103	109	anti-parallel
Strand 5	H	88	92	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	113	114	first strand
Strand 2	H	157	160	anti-parallel
Strand 3	H	164	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LW1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LW1