Analysis of interatomic Contacts of Structural Units in PDB entry:
5LW7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LW7 entry

There is 1 chain in PDB entry 5LW7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ALA 593

There are 25 helices in PDB entry 5LW7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	11	15	Right-handed 310
Helix 2	AA2	B	23	29	Right-handed alpha
Helix 3	AA3	B	29	34	Right-handed alpha
Helix 4	AA4	B	59	65	Right-handed alpha
Helix 5	AA5	B	115	124	Right-handed alpha
Helix 6	AA6	B	138	145	Right-handed alpha
Helix 7	AA7	B	149	160	Right-handed alpha
Helix 8	AA8	B	181	189	Right-handed alpha
Helix 9	AA9	B	194	202	Right-handed alpha
Helix 10	AB1	B	211	215	Right-handed 310
Helix 11	AB2	B	216	231	Right-handed alpha
Helix 12	AB3	B	246	263	Right-handed alpha
Helix 13	AB4	B	273	281	Right-handed alpha
Helix 14	AB5	B	303	313	Right-handed alpha
Helix 15	AB6	B	380	390	Right-handed alpha
Helix 16	AB7	B	419	426	Right-handed alpha
Helix 17	AB8	B	428	433	Right-handed alpha
Helix 18	AB9	B	434	441	Right-handed alpha
Helix 19	AC1	B	442	446	Right-handed 310
Helix 20	AC2	B	447	451	Right-handed 310
Helix 21	AC3	B	459	473	Right-handed alpha
Helix 22	AC4	B	489	507	Right-handed alpha
Helix 23	AC5	B	517	525	Right-handed alpha
Helix 24	AC6	B	547	556	Right-handed alpha
Helix 25	AC7	B	578	587	Right-handed alpha

There are 9 sheets in PDB entry 5LW7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	9	first strand
Strand 2	B	71	74	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	48	50	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	93	95	anti-parallel
Strand 3	B	294	297	parallel
Strand 4	B	283	288	anti-parallel
Strand 5	B	105	109	parallel
Strand 6	B	266	270	parallel
Strand 7	B	235	238	parallel
Strand 8	B	164	167	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	93	95	anti-parallel
Strand 3	B	294	297	parallel
Strand 4	B	283	288	anti-parallel
Strand 5	B	301	302	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	320	321	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	363	366	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	357	360	anti-parallel
Strand 3	B	538	541	parallel
Strand 4	B	527	534	anti-parallel
Strand 5	B	370	374	parallel
Strand 6	B	510	514	parallel
Strand 7	B	478	481	parallel
Strand 8	B	405	408	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	357	360	anti-parallel
Strand 3	B	538	541	parallel
Strand 4	B	527	534	anti-parallel
Strand 5	B	545	546	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	564	first strand
Strand 2	B	571	573	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LW7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LW7