Analysis of interatomic Contacts of Structural Units in PDB entry:
5LW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LW9 entry

There is 1 chain in PDB entry 5LW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 25SER 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5LW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 43Right-handed alpha
Helix 2
AA2
A
44 57Right-handed alpha
Helix 3
AA3
A
379 395Right-handed alpha
Helix 4
AA4
A
397 401Right-handed 310
Helix 5
AA5
A
402 416Right-handed alpha
Helix 6
AA6
A
431 435Right-handed alpha
Helix 7
AA7
A
448 454Right-handed alpha
Helix 8
AA8
A
463 467Right-handed 310
Helix 9
AA9
A
501 505Right-handed 310
Helix 10
AB1
A
523 525Right-handed 310
Helix 11
AB2
A
526 538Right-handed alpha
Helix 12
AB3
A
539 543Right-handed 310
Helix 13
AB4
A
557 564Right-handed alpha
Helix 14
AB5
A
604 606Right-handed 310
Helix 15
AB6
A
607 621Right-handed alpha
Helix 16
AB7
A
628 639Right-handed alpha
Helix 17
AB8
A
640 643Right-handed 310
Helix 18
AB9
A
644 672Right-handed alpha
Helix 19
AC1
A
681 685Right-handed 310
Helix 20
AC2
A
686 691Right-handed 310
Helix 21
AC3
A
718 722Right-handed 310
Helix 22
AC4
A
726 728Right-handed 310
Helix 23
AC5
A
737 753Right-handed alpha
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There are 5 sheets in PDB entry 5LW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
61 64parallel
Strand 3
A
578 581anti-parallel
Strand 4
A
506 514anti-parallel
Strand 5
A
595 602anti-parallel
Strand 6
A
486 490anti-parallel
Strand 7
A
422 430anti-parallel
Strand 8
A
86 89anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
377 378anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
552 553anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 499first strand
Strand 2
A
587 591anti-parallel
Strand 3
A
517 521anti-parallel
Strand 4
A
569 573anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 679first strand
Strand 2
A
730 734parallel
Strand 3
A
702 706anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il