Analysis of interatomic Contacts of Structural Units in PDB entry:
5LWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LWA entry

There are 2 chains in PDB entry 5LWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 730LEU 877
B
 LEU 732LEU 876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5LWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
733 738Right-handed alpha
Helix 2
AA2
A
749 753Right-handed alpha
Helix 3
AA3
A
782 793Right-handed alpha
Helix 4
AA4
A
795 807Right-handed alpha
Helix 5
AA5
A
808 812Right-handed 310
Helix 6
AA6
A
814 821Right-handed alpha
Helix 7
AA7
A
823 834Right-handed alpha
Helix 8
AA8
B
733 738Right-handed alpha
Helix 9
AA9
B
749 753Right-handed alpha
Helix 10
AB1
B
782 793Right-handed alpha
Helix 11
AB2
B
795 807Right-handed alpha
Helix 12
AB3
B
808 812Right-handed 310
Helix 13
AB4
B
816 821Right-handed alpha
Helix 14
AB5
B
823 835Right-handed alpha
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There are 4 sheets in PDB entry 5LWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 748first strand
Strand 2
A
765 769anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
845 849first strand
Strand 2
A
836 842anti-parallel
Strand 3
A
856 863parallel
Strand 4
A
869 872anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
742 748first strand
Strand 2
B
765 769anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
845 849first strand
Strand 2
B
836 842anti-parallel
Strand 3
B
856 863parallel
Strand 4
B
869 872anti-parallel
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