Analysis of interatomic Contacts of Structural Units in PDB entry:
5LWF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LWF entry

There are 4 chains in PDB entry 5LWF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 30	ASN 291
B	ASP 31	ASN 291
C	VAL 5	VAL 126
D	GLN 6	VAL 126

There are 30 helices in PDB entry 5LWF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	40	Right-handed alpha
Helix 2	AA2	A	71	86	Right-handed alpha
Helix 3	AA3	A	88	92	Right-handed 310
Helix 4	AA4	A	98	102	Right-handed 310
Helix 5	AA5	A	108	112	Right-handed 310
Helix 6	AA6	A	119	130	Right-handed alpha
Helix 7	AA7	A	131	142	Right-handed alpha
Helix 8	AA8	A	144	155	Right-handed alpha
Helix 9	AA9	A	167	171	Right-handed 310
Helix 10	AB1	A	182	195	Right-handed alpha
Helix 11	AB2	A	200	213	Right-handed alpha
Helix 12	AB3	A	220	225	Right-handed 310
Helix 13	AB4	A	275	291	Right-handed alpha
Helix 14	AB5	B	32	40	Right-handed alpha
Helix 15	AB6	B	71	86	Right-handed alpha
Helix 16	AB7	B	88	92	Right-handed 310
Helix 17	AB8	B	98	102	Right-handed 310
Helix 18	AB9	B	108	112	Right-handed 310
Helix 19	AC1	B	119	129	Right-handed alpha
Helix 20	AC2	B	131	142	Right-handed alpha
Helix 21	AC3	B	144	155	Right-handed alpha
Helix 22	AC4	B	167	171	Right-handed 310
Helix 23	AC5	B	182	195	Right-handed alpha
Helix 24	AC6	B	200	213	Right-handed alpha
Helix 25	AC7	B	220	224	Right-handed 310
Helix 26	AC8	B	275	291	Right-handed alpha
Helix 27	AC9	C	90	94	Right-handed 310
Helix 28	AD1	C	111	115	Right-handed 310
Helix 29	AD2	D	90	94	Right-handed 310
Helix 30	AD3	D	111	115	Right-handed 310

There are 12 sheets in PDB entry 5LWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	43	50	anti-parallel
Strand 3	A	259	266	anti-parallel
Strand 4	A	243	251	anti-parallel
Strand 5	A	230	238	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	180	181	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	117	118	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	43	50	anti-parallel
Strand 3	B	259	266	anti-parallel
Strand 4	B	243	251	anti-parallel
Strand 5	B	230	238	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	180	181	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	117	118	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	21	28	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	71	76	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	63	first strand
Strand 2	C	49	54	anti-parallel
Strand 3	C	36	42	anti-parallel
Strand 4	C	95	102	anti-parallel
Strand 5	C	117	118	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	63	first strand
Strand 2	C	49	54	anti-parallel
Strand 3	C	36	42	anti-parallel
Strand 4	C	95	102	anti-parallel
Strand 5	C	122	124	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	10	first strand
Strand 2	D	21	27	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	73	76	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	49	54	anti-parallel
Strand 3	D	36	42	anti-parallel
Strand 4	D	95	102	anti-parallel
Strand 5	D	117	118	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	49	54	anti-parallel
Strand 3	D	36	42	anti-parallel
Strand 4	D	95	102	anti-parallel
Strand 5	D	122	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LWF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LWF