Analysis of interatomic Contacts of Structural Units in PDB entry:
5LWG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LWG entry

There are 4 chains in PDB entry 5LWG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1PRO 208
C
 SER 1LEU 300
B
 ASN 11PRO 257
D
 THR 13TRP 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5LWG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
39 44Right-handed 310
Helix 3
AA3
A
66 71Right-handed alpha
Helix 4
AA4
A
76 81Right-handed alpha
Helix 5
AA5
A
82 85Right-handed 310
Helix 6
AA6
C
55 61Right-handed alpha
Helix 7
AA7
C
123 128Right-handed alpha
Helix 8
AA8
C
175 178Right-handed 310
Helix 9
AA9
C
227 232Right-handed alpha
Helix 10
AB1
B
53 58Right-handed alpha
Helix 11
AB2
B
96 100Right-handed 310
Helix 12
AB3
B
115 119Right-handed 310
Helix 13
AB4
B
161 165Right-handed 310
Helix 14
AB5
B
170 175Right-handed alpha
Helix 15
AB6
D
63 68Right-handed 310
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There are 13 sheets in PDB entry 5LWG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
C
200 205parallel
Strand 3
C
132 144anti-parallel
Strand 4
C
255 269anti-parallel
Strand 5
C
71 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
255 269anti-parallel
Strand 3
C
132 144anti-parallel
Strand 4
C
214 215anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
53 54anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
C
30 31parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
166 172anti-parallel
Strand 3
A
110 116anti-parallel
Strand 4
A
131 133anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
189 191anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
C
112 118anti-parallel
Strand 3
C
100 106anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
237 247anti-parallel
Strand 3
C
150 158anti-parallel
Strand 4
C
189 194anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 166first strand
Strand 2
C
171 173anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 76first strand
Strand 2
B
237 248anti-parallel
Strand 3
B
128 138anti-parallel
Strand 4
B
189 194anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 76first strand
Strand 2
B
237 248anti-parallel
Strand 3
B
128 138anti-parallel
Strand 4
B
203 204anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
213 219anti-parallel
Strand 3
B
153 155anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
213 219anti-parallel
Strand 3
B
148 150anti-parallel
Strand 4
B
181 183anti-parallel
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