Analysis of interatomic Contacts of Structural Units in PDB entry:
5LWI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LWI entry

There are 3 chains in PDB entry 5LWI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1PRO 208
C
 SER 1LEU 300
B
 SER 22PRO 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5LWI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
38 44Right-handed 310
Helix 3
AA3
A
63 71Right-handed alpha
Helix 4
AA4
C
55 60Right-handed alpha
Helix 5
AA5
C
121 128Right-handed alpha
Helix 6
AA6
C
230 234Right-handed 310
Helix 7
AA7
B
62 67Right-handed alpha
Helix 8
AA8
B
84 88Right-handed 310
Helix 9
AA9
B
115 119Right-handed 310
Helix 10
AB1
B
161 169Right-handed 310
Helix 11
AB2
B
170 176Right-handed alpha
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There are 12 sheets in PDB entry 5LWI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
C
200 204parallel
Strand 3
C
140 144anti-parallel
Strand 4
C
256 269anti-parallel
Strand 5
C
64 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
C
200 204parallel
Strand 3
C
140 144anti-parallel
Strand 4
C
256 269anti-parallel
Strand 5
C
132 138anti-parallel
Strand 6
C
214 215anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 54first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
140 144anti-parallel
Strand 5
C
30 31parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
110 116anti-parallel
Strand 4
A
131 133anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
87 89anti-parallel
Strand 3
A
189 191anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
C
112 118anti-parallel
Strand 3
C
101 106anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
237 247anti-parallel
Strand 3
C
150 158anti-parallel
Strand 4
C
190 194anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 166first strand
Strand 2
C
171 173anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 76first strand
Strand 2
B
237 244anti-parallel
Strand 3
B
132 139anti-parallel
Strand 4
B
191 194anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
213 216anti-parallel
Strand 3
B
153 155anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
203 204anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
146 150anti-parallel
Strand 3
B
218 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il