Analysis of interatomic Contacts of Structural Units in PDB entry:
5LWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LWK entry

There are 2 chains in PDB entry 5LWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 122
B
 MET 1HIS 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5LWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
35 46Right-handed alpha
Helix 3
AA3
A
61 72Right-handed alpha
Helix 4
AA4
A
85 93Right-handed alpha
Helix 5
AA5
A
107 122Right-handed alpha
Helix 6
AA6
B
10 25Right-handed alpha
Helix 7
AA7
B
35 46Right-handed alpha
Helix 8
AA8
B
62 72Right-handed alpha
Helix 9
AA9
B
85 92Right-handed alpha
Helix 10
AB1
B
107 121Right-handed alpha
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There are 3 sheets in PDB entry 5LWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
4 7parallel
Strand 3
A
50 53parallel
Strand 4
A
77 82parallel
Strand 5
B
100 103parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
B
77 82parallel
Strand 3
B
50 53parallel
Strand 4
B
2 7parallel
Strand 5
B
27 33parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
60 61anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il