Analysis of interatomic Contacts of Structural Units in PDB entry:
5LWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LWW entry

There is 1 chain in PDB entry 5LWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 28ILE 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5LWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 121Right-handed 310
Helix 2
AA2
A
157 162Right-handed 310
Helix 3
AA3
A
193 203Right-handed alpha
Helix 4
AA4
A
319 322Right-handed 310
Helix 5
AA5
A
355 359Right-handed 310
Helix 6
AA6
A
406 414Right-handed alpha
Helix 7
AA7
A
491 495Right-handed 310
Helix 8
AA8
A
518 524Right-handed alpha
Helix 9
AA9
A
534 540Right-handed 310
Helix 10
AB1
A
542 558Right-handed alpha
Helix 11
AB2
A
560 564Right-handed 310
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There are 7 sheets in PDB entry 5LWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
51 63anti-parallel
Strand 3
A
91 98parallel
Strand 4
A
136 142anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 87first strand
Strand 2
A
164 170parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
107 109anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
179 189anti-parallel
Strand 3
A
242 249parallel
Strand 4
A
290 296anti-parallel
Strand 5
A
265 270anti-parallel
Strand 6
A
278 280anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
228 230anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 237first strand
Strand 2
A
324 329parallel
Strand 3
A
303 310anti-parallel
Strand 4
A
256 260anti-parallel
Strand 5
A
282 285anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 394first strand
Strand 2
A
373 384anti-parallel
Strand 3
A
435 442parallel
Strand 4
A
498 505anti-parallel
Strand 5
A
457 464anti-parallel
Strand 6
A
481 482anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 429first strand
Strand 2
A
527 532parallel
Strand 3
A
510 516anti-parallel
Strand 4
A
448 452anti-parallel
Strand 5
A
484 487anti-parallel
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