Analysis of interatomic Contacts of Structural Units in PDB entry:
5LXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LXE entry

There are 2 chains in PDB entry 5LXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 334
B
 MET 1LEU 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5LXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
52 64Right-handed alpha
Helix 3
AA3
A
81 96Right-handed alpha
Helix 4
AA4
A
108 115Right-handed alpha
Helix 5
AA5
A
123 144Right-handed alpha
Helix 6
AA6
A
177 188Right-handed alpha
Helix 7
AA7
A
199 205Right-handed alpha
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
220 224Right-handed 310
Helix 10
AB1
A
237 244Right-handed alpha
Helix 11
AB2
A
245 253Right-handed 310
Helix 12
AB3
A
265 274Right-handed alpha
Helix 13
AB4
A
275 280Right-handed alpha
Helix 14
AB5
A
288 302Right-handed alpha
Helix 15
AB6
A
315 327Right-handed alpha
Helix 16
AB7
A
327 333Right-handed alpha
Helix 17
AB8
B
15 29Right-handed alpha
Helix 18
AB9
B
43 47Right-handed 310
Helix 19
AC1
B
52 64Right-handed alpha
Helix 20
AC2
B
81 96Right-handed alpha
Helix 21
AC3
B
108 115Right-handed alpha
Helix 22
AC4
B
123 144Right-handed alpha
Helix 23
AC5
B
177 188Right-handed alpha
Helix 24
AC6
B
198 205Right-handed alpha
Helix 25
AC7
B
205 217Right-handed alpha
Helix 26
AC8
B
220 224Right-handed 310
Helix 27
AC9
B
237 245Right-handed alpha
Helix 28
AD1
B
246 249Right-handed 310
Helix 29
AD2
B
288 302Right-handed alpha
Helix 30
AD3
B
315 333Right-handed alpha
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There are 3 sheets in PDB entry 5LXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
225 234parallel
Strand 3
A
306 310parallel
Strand 4
A
4 9parallel
Strand 5
A
33 36parallel
Strand 6
A
68 71parallel
Strand 7
A
100 104parallel
Strand 8
A
171 174parallel
Strand 9
A
190 194parallel
Strand 10
A
225 234parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
155 159anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 286first strand
Strand 2
B
225 234parallel
Strand 3
B
306 310parallel
Strand 4
B
4 9parallel
Strand 5
B
33 36parallel
Strand 6
B
68 71parallel
Strand 7
B
100 104parallel
Strand 8
B
171 174parallel
Strand 9
B
190 194parallel
Strand 10
B
225 234parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il