Analysis of interatomic Contacts of Structural Units in PDB entry:
5LXQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LXQ entry

There are 4 chains in PDB entry 5LXQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 9ARG 159
A
 MET 429LYS 578
C
 PRO 9ARG 159
H
 MET 429LYS 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5LXQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
29 41Right-handed alpha
Helix 2
AA2
B
54 61Right-handed alpha
Helix 3
AA3
B
77 95Right-handed alpha
Helix 4
AA4
B
109 122Right-handed alpha
Helix 5
AA5
B
125 137Right-handed alpha
Helix 6
AA6
B
142 152Right-handed alpha
Helix 7
AA7
A
430 440Right-handed alpha
Helix 8
AA8
A
445 450Right-handed alpha
Helix 9
AA9
A
454 456Right-handed 310
Helix 10
AB1
A
466 477Right-handed alpha
Helix 11
AB2
A
498 501Right-handed 310
Helix 12
AB3
A
504 508Right-handed 310
Helix 13
AB4
A
511 519Right-handed alpha
Helix 14
AB5
A
530 540Right-handed alpha
Helix 15
AB6
A
569 577Right-handed alpha
Helix 16
AB7
C
29 41Right-handed alpha
Helix 17
AB8
C
54 61Right-handed alpha
Helix 18
AB9
C
77 95Right-handed alpha
Helix 19
AC1
C
109 122Right-handed alpha
Helix 20
AC2
C
125 137Right-handed alpha
Helix 21
AC3
C
142 152Right-handed alpha
Helix 22
AC4
H
430 440Right-handed alpha
Helix 23
AC5
H
445 450Right-handed alpha
Helix 24
AC6
H
454 456Right-handed 310
Helix 25
AC7
H
466 477Right-handed alpha
Helix 26
AC8
H
498 501Right-handed 310
Helix 27
AC9
H
504 508Right-handed 310
Helix 28
AD1
H
511 519Right-handed alpha
Helix 29
AD2
H
530 540Right-handed alpha
Helix 30
AD3
H
569 577Right-handed alpha
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There are 8 sheets in PDB entry 5LXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
99 104parallel
Strand 4
B
42 47parallel
Strand 5
B
64 67parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
560 568anti-parallel
Strand 3
A
545 552anti-parallel
Strand 4
A
524 526parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
480 484parallel
Strand 3
A
491 496anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
509 510anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
99 104parallel
Strand 4
C
42 47parallel
Strand 5
C
64 67parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
451 452first strand
Strand 2
H
560 568anti-parallel
Strand 3
H
545 552anti-parallel
Strand 4
H
524 526parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
459 460first strand
Strand 2
H
480 484parallel
Strand 3
H
491 496anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
464 465first strand
Strand 2
H
509 510anti-parallel
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