Analysis of interatomic Contacts of Structural Units in PDB entry:
5LXV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LXV entry

There are 4 chains in PDB entry 5LXV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ALA 174
B
 VAL 889TYR 953
C
 ALA 1SER 173
D
 VAL 889TYR 953
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5LXV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 61Right-handed 310
Helix 2
AA2
A
62 67Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
82 84Right-handed 310
Helix 5
AA5
A
97 101Right-handed 310
Helix 6
AA6
B
900 914Right-handed alpha
Helix 7
AA7
B
918 923Right-handed alpha
Helix 8
AA8
B
931 943Right-handed alpha
Helix 9
AA9
C
57 61Right-handed 310
Helix 10
AB1
C
62 67Right-handed alpha
Helix 11
AB2
C
68 72Right-handed 310
Helix 12
AB3
C
82 84Right-handed 310
Helix 13
AB4
C
97 101Right-handed 310
Helix 14
AB5
D
900 914Right-handed alpha
Helix 15
AB6
D
918 923Right-handed alpha
Helix 16
AB7
D
931 943Right-handed alpha
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There are 6 sheets in PDB entry 5LXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 55first strand
Strand 2
A
106 115anti-parallel
Strand 3
A
19 27anti-parallel
Strand 4
A
4 9anti-parallel
Strand 5
A
161 165parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
167 170parallel
Strand 3
A
124 130anti-parallel
Strand 4
A
36 42anti-parallel
Strand 5
A
86 92anti-parallel
Strand 6
A
76 81anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
167 170parallel
Strand 3
A
124 130anti-parallel
Strand 4
A
36 42anti-parallel
Strand 5
A
148 153anti-parallel
Strand 6
A
156 159anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 55first strand
Strand 2
C
106 115anti-parallel
Strand 3
C
19 27anti-parallel
Strand 4
C
4 9anti-parallel
Strand 5
C
161 165parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
167 170parallel
Strand 3
C
124 130anti-parallel
Strand 4
C
36 42anti-parallel
Strand 5
C
86 92anti-parallel
Strand 6
C
76 81anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
167 170parallel
Strand 3
C
124 130anti-parallel
Strand 4
C
36 42anti-parallel
Strand 5
C
148 153anti-parallel
Strand 6
C
156 159anti-parallel
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