Analysis of interatomic Contacts of Structural Units in PDB entry:
5LXY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5LXY entry

There are 14 chains in PDB entry 5LXY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	PHE 84
D	PHE 286	LYS 324
B	ALA 6	SER 86
C	PHE 286	LYS 324
E	ALA 6	SER 86
F	ARG 285	LYS 324
G	GLU 7	SER 86
H	ARG 285	LYS 324
I	GLU 7	SER 86
J	PHE 286	LEU 323
K	ASP 9	SER 86
L	PHE 286	LEU 323
M	GLU 7	ARG 85
N	PHE 286	LEU 323

There are 36 helices in PDB entry 5LXY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	32	Right-handed alpha
Helix 2	AA2	A	61	71	Right-handed alpha
Helix 3	AA3	D	292	300	Right-handed alpha
Helix 4	AA4	D	309	317	Right-handed alpha
Helix 5	AA5	D	319	324	Right-handed alpha
Helix 6	AA6	B	7	10	Right-handed alpha
Helix 7	AA7	B	22	31	Right-handed alpha
Helix 8	AA8	B	61	71	Right-handed alpha
Helix 9	AA9	C	292	300	Right-handed alpha
Helix 10	AB1	C	309	317	Right-handed alpha
Helix 11	AB2	C	319	324	Right-handed alpha
Helix 12	AB3	E	22	31	Right-handed alpha
Helix 13	AB4	E	61	71	Right-handed alpha
Helix 14	AB5	F	292	300	Right-handed alpha
Helix 15	AB6	F	309	317	Right-handed alpha
Helix 16	AB7	F	319	324	Right-handed alpha
Helix 17	AB8	G	22	31	Right-handed alpha
Helix 18	AB9	G	61	71	Right-handed alpha
Helix 19	AC1	H	292	300	Right-handed alpha
Helix 20	AC2	H	309	317	Right-handed alpha
Helix 21	AC3	I	7	11	Right-handed 310
Helix 22	AC4	I	22	31	Right-handed alpha
Helix 23	AC5	I	61	71	Right-handed alpha
Helix 24	AC6	J	292	300	Right-handed alpha
Helix 25	AC7	J	309	317	Right-handed alpha
Helix 26	AC8	J	319	323	Right-handed 310
Helix 27	AC9	K	22	31	Right-handed alpha
Helix 28	AD1	K	61	71	Right-handed alpha
Helix 29	AD2	L	292	300	Right-handed alpha
Helix 30	AD3	L	309	317	Right-handed alpha
Helix 31	AD4	L	319	323	Right-handed 310
Helix 32	AD5	M	26	34	Right-handed alpha
Helix 33	AD6	M	61	71	Right-handed alpha
Helix 34	AD7	N	292	300	Right-handed alpha
Helix 35	AD8	N	309	317	Right-handed alpha
Helix 36	AD9	N	319	323	Right-handed 310

There are 14 sheets in PDB entry 5LXY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	11	15	anti-parallel
Strand 4	A	81	82	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	78	79	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	53	57	anti-parallel
Strand 3	B	11	15	anti-parallel
Strand 4	B	81	84	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	78	79	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	40	first strand
Strand 2	E	53	57	anti-parallel
Strand 3	E	11	15	anti-parallel
Strand 4	E	81	84	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	78	79	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	40	first strand
Strand 2	G	53	57	anti-parallel
Strand 3	G	11	15	anti-parallel
Strand 4	G	81	84	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	75	first strand
Strand 2	G	78	79	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	15	first strand
Strand 2	I	81	82	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	36	40	first strand
Strand 2	I	54	57	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	74	75	first strand
Strand 2	I	78	79	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	39	first strand
Strand 2	K	52	57	anti-parallel
Strand 3	K	11	15	anti-parallel
Strand 4	K	81	84	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	74	75	first strand
Strand 2	K	78	79	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	36	38	first strand
Strand 2	M	53	57	anti-parallel
Strand 3	M	11	15	anti-parallel
Strand 4	M	81	84	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5LXY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5LXY