Analysis of interatomic Contacts of Structural Units in PDB entry:
5LY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LY3 entry

There are 2 chains in PDB entry 5LY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4PRO 430
B
 GLY 188ARG 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5LY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 12Right-handed alpha
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
55 62Right-handed alpha
Helix 4
AA4
A
66 75Right-handed alpha
Helix 5
AA5
A
79 83Right-handed alpha
Helix 6
AA6
A
97 114Right-handed alpha
Helix 7
AA7
A
136 151Right-handed alpha
Helix 8
AA8
A
164 172Right-handed alpha
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
207 223Right-handed alpha
Helix 11
AB2
A
224 229Right-handed alpha
Helix 12
AB3
A
230 242Right-handed alpha
Helix 13
AB4
A
247 258Right-handed alpha
Helix 14
AB5
A
259 262Right-handed 310
Helix 15
AB6
A
277 282Right-handed 310
Helix 16
AB7
A
283 290Right-handed alpha
Helix 17
AB8
A
296 305Right-handed alpha
Helix 18
AB9
A
325 336Right-handed alpha
Helix 19
AC1
A
338 346Right-handed alpha
Helix 20
AC2
A
353 357Right-handed 310
Helix 21
AC3
A
370 383Right-handed alpha
Helix 22
AC4
A
383 390Right-handed alpha
Helix 23
AC5
A
400 413Right-handed alpha
Helix 24
AC6
B
194 201Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5LY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
13 18anti-parallel
Strand 4
A
125 131parallel
Strand 5
A
156 163parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
40 42anti-parallel
Strand 3
A
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
318 321anti-parallel
Strand 3
A
202 204parallel
Strand 4
A
187 193anti-parallel
Strand 5
A
176 182anti-parallel
Strand 6
A
348 352parallel
Strand 7
A
391 394parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
273 276anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il