Analysis of interatomic Contacts of Structural Units in PDB entry:
5LY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LY7 entry

There are 2 chains in PDB entry 5LY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1ASP 332
B
 HIS -1ASP 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5LY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
39 54Right-handed alpha
Helix 4
AA4
A
80 86Right-handed alpha
Helix 5
AA5
A
89 108Right-handed alpha
Helix 6
AA6
A
128 132Right-handed 310
Helix 7
AA7
A
136 154Right-handed alpha
Helix 8
AA8
A
183 190Right-handed alpha
Helix 9
AA9
A
192 200Right-handed alpha
Helix 10
AB1
A
223 228Right-handed alpha
Helix 11
AB2
A
248 252Right-handed 310
Helix 12
AB3
A
256 268Right-handed alpha
Helix 13
AB4
A
277 292Right-handed alpha
Helix 14
AB5
A
296 303Right-handed 310
Helix 15
AB6
A
310 314Right-handed 310
Helix 16
AB7
A
315 328Right-handed alpha
Helix 17
AB8
B
15 23Right-handed alpha
Helix 18
AB9
B
33 37Right-handed 310
Helix 19
AC1
B
39 54Right-handed alpha
Helix 20
AC2
B
80 86Right-handed alpha
Helix 21
AC3
B
89 108Right-handed alpha
Helix 22
AC4
B
128 132Right-handed 310
Helix 23
AC5
B
136 154Right-handed alpha
Helix 24
AC6
B
183 190Right-handed alpha
Helix 25
AC7
B
192 200Right-handed alpha
Helix 26
AC8
B
223 228Right-handed alpha
Helix 27
AC9
B
248 252Right-handed 310
Helix 28
AD1
B
256 267Right-handed alpha
Helix 29
AD2
B
277 292Right-handed alpha
Helix 30
AD3
B
296 303Right-handed 310
Helix 31
AD4
B
310 314Right-handed 310
Helix 32
AD5
B
315 328Right-handed alpha
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There are 6 sheets in PDB entry 5LY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
58 61parallel
Strand 3
A
29 32parallel
Strand 4
A
5 8parallel
Strand 5
A
271 273parallel
Strand 6
A
240 245parallel
Strand 7
A
204 207parallel
Strand 8
A
159 163parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
68 69anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
216 219anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
58 61parallel
Strand 3
B
29 32parallel
Strand 4
B
5 8parallel
Strand 5
B
271 273parallel
Strand 6
B
240 245parallel
Strand 7
B
204 207parallel
Strand 8
B
159 163parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
68 69anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
216 219anti-parallel
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