Analysis of interatomic Contacts of Structural Units in PDB entry:
5LY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LY9 entry

There are 2 chains in PDB entry 5LY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 368
B
 ALA 1ASN 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5LY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 22Right-handed alpha
Helix 2
AA2
A
23 56Right-handed alpha
Helix 3
AA3
A
61 86Right-handed alpha
Helix 4
AA4
A
86 115Right-handed alpha
Helix 5
AA5
A
190 194Right-handed 310
Helix 6
AA6
A
214 216Right-handed 310
Helix 7
AA7
A
238 243Right-handed alpha
Helix 8
AA8
A
243 255Right-handed alpha
Helix 9
AA9
A
261 265Right-handed 310
Helix 10
AB1
A
270 273Right-handed 310
Helix 11
AB2
A
274 285Right-handed alpha
Helix 12
AB3
A
294 305Right-handed alpha
Helix 13
AB4
A
308 311Right-handed 310
Helix 14
AB5
A
312 322Right-handed alpha
Helix 15
AB6
A
327 331Right-handed 310
Helix 16
AB7
A
338 340Right-handed 310
Helix 17
AB8
A
342 368Right-handed alpha
Helix 18
AB9
B
7 22Right-handed alpha
Helix 19
AC1
B
23 56Right-handed alpha
Helix 20
AC2
B
61 86Right-handed alpha
Helix 21
AC3
B
86 115Right-handed alpha
Helix 22
AC4
B
190 194Right-handed 310
Helix 23
AC5
B
214 216Right-handed 310
Helix 24
AC6
B
238 243Right-handed alpha
Helix 25
AC7
B
243 255Right-handed alpha
Helix 26
AC8
B
261 265Right-handed 310
Helix 27
AC9
B
270 273Right-handed 310
Helix 28
AD1
B
274 285Right-handed alpha
Helix 29
AD2
B
294 305Right-handed alpha
Helix 30
AD3
B
308 311Right-handed 310
Helix 31
AD4
B
312 322Right-handed alpha
Helix 32
AD5
B
327 331Right-handed 310
Helix 33
AD6
B
338 340Right-handed 310
Helix 34
AD7
B
342 367Right-handed alpha
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There are 6 sheets in PDB entry 5LY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
139 140anti-parallel
Strand 3
A
143 144anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
228 229anti-parallel
Strand 3
A
218 220anti-parallel
Strand 4
A
211 213anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
335 336anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
139 140anti-parallel
Strand 3
B
143 144anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
228 229anti-parallel
Strand 3
B
218 220anti-parallel
Strand 4
B
211 213anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 324first strand
Strand 2
B
335 336anti-parallel
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