Analysis of interatomic Contacts of Structural Units in PDB entry:
5LYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LYN entry

There are 4 chains in PDB entry 5LYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 93LEU 225
B
 GLY 93LEU 225
C
 PRO 1ASP 7
D
 PRO 1ASP 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5LYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 115Right-handed alpha
Helix 2
AA2
A
117 132Right-handed alpha
Helix 3
AA3
A
135 149Right-handed alpha
Helix 4
AA4
A
151 166Right-handed alpha
Helix 5
AA5
A
169 183Right-handed alpha
Helix 6
AA6
A
185 201Right-handed alpha
Helix 7
AA7
A
202 204Right-handed 310
Helix 8
AA8
A
205 224Right-handed alpha
Helix 9
AA9
B
94 115Right-handed alpha
Helix 10
AB1
B
117 132Right-handed alpha
Helix 11
AB2
B
135 149Right-handed alpha
Helix 12
AB3
B
151 166Right-handed alpha
Helix 13
AB4
B
169 183Right-handed alpha
Helix 14
AB5
B
185 201Right-handed alpha
Helix 15
AB6
B
202 204Right-handed 310
Helix 16
AB7
B
205 225Right-handed alpha
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There are no sheets in PDB entry 5LYN
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il