Analysis of interatomic Contacts of Structural Units in PDB entry:
5LYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LYO entry

There are 3 chains in PDB entry 5LYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 603VAL 855
B
 GLY 601VAL 855
C
 GLY 601VAL 855
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5LYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
654 659Right-handed 310
Helix 2
AA2
A
668 670Right-handed 310
Helix 3
AA3
A
772 780Right-handed alpha
Helix 4
AA4
A
845 854Right-handed alpha
Helix 5
AA5
B
654 659Right-handed 310
Helix 6
AA6
B
668 670Right-handed 310
Helix 7
AA7
B
772 780Right-handed alpha
Helix 8
AA8
B
845 854Right-handed alpha
Helix 9
AA9
C
654 659Right-handed 310
Helix 10
AB1
C
668 670Right-handed 310
Helix 11
AB2
C
772 780Right-handed alpha
Helix 12
AB3
C
845 854Right-handed alpha
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There are 6 sheets in PDB entry 5LYO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 634first strand
Strand 2
A
639 645anti-parallel
Strand 3
A
650 653anti-parallel
Strand 4
A
713 717anti-parallel
Strand 5
A
690 699anti-parallel
Strand 6
A
672 676anti-parallel
Strand 7
A
629 634anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 749first strand
Strand 2
A
764 770anti-parallel
Strand 3
A
788 795anti-parallel
Strand 4
A
837 841anti-parallel
Strand 5
A
818 823anti-parallel
Strand 6
A
808 812anti-parallel
Strand 7
A
744 749anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 634first strand
Strand 2
B
638 645anti-parallel
Strand 3
B
650 653anti-parallel
Strand 4
B
713 717anti-parallel
Strand 5
B
690 699anti-parallel
Strand 6
B
672 676anti-parallel
Strand 7
B
629 634anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
744 749first strand
Strand 2
B
764 770anti-parallel
Strand 3
B
788 795anti-parallel
Strand 4
B
837 841anti-parallel
Strand 5
B
818 823anti-parallel
Strand 6
B
808 812anti-parallel
Strand 7
B
744 749anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
629 634first strand
Strand 2
C
638 645anti-parallel
Strand 3
C
650 653anti-parallel
Strand 4
C
713 717anti-parallel
Strand 5
C
690 699anti-parallel
Strand 6
C
672 676anti-parallel
Strand 7
C
629 634anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
744 749first strand
Strand 2
C
764 771anti-parallel
Strand 3
C
788 795anti-parallel
Strand 4
C
837 841anti-parallel
Strand 5
C
818 823anti-parallel
Strand 6
C
808 812anti-parallel
Strand 7
C
744 749anti-parallel
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