Analysis of interatomic Contacts of Structural Units in PDB entry:
5LZK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LZK entry

There are 2 chains in PDB entry 5LZK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 118PHE 286
B
 GLY 118PHE 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5LZK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
134 145Right-handed alpha
Helix 2
AA2
A
159 172Right-handed alpha
Helix 3
AA3
A
184 195Right-handed alpha
Helix 4
AA4
A
198 202Right-handed 310
Helix 5
AA5
A
248 253Right-handed alpha
Helix 6
AA6
A
264 280Right-handed alpha
Helix 7
AA7
B
134 145Right-handed alpha
Helix 8
AA8
B
159 172Right-handed alpha
Helix 9
AA9
B
184 195Right-handed alpha
Helix 10
AB1
B
198 202Right-handed 310
Helix 11
AB2
B
247 253Right-handed alpha
Helix 12
AB3
B
264 280Right-handed alpha
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There are 4 sheets in PDB entry 5LZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 126first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
238 242anti-parallel
Strand 4
A
231 234anti-parallel
Strand 5
A
149 154anti-parallel
Strand 6
A
175 181parallel
Strand 7
A
205 210parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
222 224anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 126first strand
Strand 2
B
256 263anti-parallel
Strand 3
B
238 242anti-parallel
Strand 4
B
231 234anti-parallel
Strand 5
B
149 154anti-parallel
Strand 6
B
175 181parallel
Strand 7
B
205 210parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
222 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il