Analysis of interatomic Contacts of Structural Units in PDB entry:
5M04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M04 entry

There is 1 chain in PDB entry 5M04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2VAL 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5M04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 61Right-handed 310
Helix 2
AA2
A
126 131Right-handed 310
Helix 3
AA3
A
171 180Right-handed alpha
Helix 4
AA4
A
214 219Right-handed alpha
Helix 5
AA5
A
225 234Right-handed alpha
Helix 6
AA6
A
235 238Right-handed 310
Helix 7
AA7
A
254 270Right-handed alpha
Helix 8
AA8
A
270 275Right-handed alpha
Helix 9
AA9
A
284 288Right-handed 310
Helix 10
AB1
A
289 304Right-handed alpha
Helix 11
AB2
A
320 335Right-handed alpha
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There are 4 sheets in PDB entry 5M04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
2 12parallel
Strand 3
A
149 157anti-parallel
Strand 4
A
94 98anti-parallel
Strand 5
A
104 108anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
2 12parallel
Strand 3
A
185 187anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
45 49parallel
Strand 3
A
114 118anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 204first strand
Strand 2
A
207 213anti-parallel
Strand 3
A
162 165parallel
Strand 4
A
240 246parallel
Strand 5
A
278 283parallel
Strand 6
A
311 312parallel
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