Analysis of interatomic Contacts of Structural Units in PDB entry:
5M05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M05 entry

There is 1 chain in PDB entry 5M05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 33GLU 787
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5M05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 75Right-handed 310
Helix 2
AA2
A
80 84Right-handed 310
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
96 110Right-handed alpha
Helix 5
AA5
A
134 142Right-handed alpha
Helix 6
AA6
A
145 149Right-handed 310
Helix 7
AA7
A
152 168Right-handed alpha
Helix 8
AA8
A
182 198Right-handed alpha
Helix 9
AA9
A
218 225Right-handed alpha
Helix 10
AB1
A
226 235Right-handed alpha
Helix 11
AB2
A
273 278Right-handed 310
Helix 12
AB3
A
287 297Right-handed alpha
Helix 13
AB4
A
298 305Right-handed alpha
Helix 14
AB5
A
309 313Right-handed 310
Helix 15
AB6
A
327 343Right-handed alpha
Helix 16
AB7
A
345 363Right-handed alpha
Helix 17
AB8
A
381 392Right-handed alpha
Helix 18
AB9
A
394 404Right-handed alpha
Helix 19
AC1
A
419 451Right-handed alpha
Helix 20
AC2
A
476 507Right-handed alpha
Helix 21
AC3
A
516 520Right-handed 310
Helix 22
AC4
A
521 530Right-handed alpha
Helix 23
AC5
A
536 546Right-handed alpha
Helix 24
AC6
A
551 564Right-handed alpha
Helix 25
AC7
A
596 603Right-handed alpha
Helix 26
AC8
A
606 615Right-handed alpha
Helix 27
AC9
A
618 625Right-handed alpha
Helix 28
AD1
A
658 676Right-handed alpha
Helix 29
AD2
A
697 708Right-handed alpha
Helix 30
AD3
A
709 719Right-handed alpha
Helix 31
AD4
A
727 735Right-handed alpha
Helix 32
AD5
A
748 759Right-handed alpha
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There are 7 sheets in PDB entry 5M05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
43 53anti-parallel
Strand 3
A
56 61anti-parallel
Strand 4
A
67 71anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
678 685parallel
Strand 4
A
171 176parallel
Strand 5
A
459 465parallel
Strand 6
A
249 256anti-parallel
Strand 7
A
262 270anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
245 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
376 377anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
413 414anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 570first strand
Strand 2
A
580 585anti-parallel
Strand 3
A
588 593anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 726first strand
Strand 2
A
773 776anti-parallel
Strand 3
A
767 769anti-parallel
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