Analysis of interatomic Contacts of Structural Units in PDB entry:
5M09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M09 entry

There are 2 chains in PDB entry 5M09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 256
B
 ALA 2GLY 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5M09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 50Right-handed alpha
Helix 2
AA2
A
50 67Right-handed alpha
Helix 3
AA3
A
97 105Right-handed alpha
Helix 4
AA4
A
110 130Right-handed alpha
Helix 5
AA5
A
139 141Right-handed 310
Helix 6
AA6
A
170 175Right-handed alpha
Helix 7
AA7
A
181 198Right-handed alpha
Helix 8
AA8
A
214 218Right-handed 310
Helix 9
AA9
A
219 224Right-handed 310
Helix 10
AB1
A
225 233Right-handed alpha
Helix 11
AB2
A
236 240Right-handed 310
Helix 12
AB3
A
243 256Right-handed alpha
Helix 13
AB4
B
44 50Right-handed alpha
Helix 14
AB5
B
50 67Right-handed alpha
Helix 15
AB6
B
97 105Right-handed alpha
Helix 16
AB7
B
110 130Right-handed alpha
Helix 17
AB8
B
139 141Right-handed 310
Helix 18
AB9
B
170 175Right-handed alpha
Helix 19
AC1
B
181 198Right-handed alpha
Helix 20
AC2
B
214 218Right-handed 310
Helix 21
AC3
B
219 224Right-handed 310
Helix 22
AC4
B
225 233Right-handed alpha
Helix 23
AC5
B
236 240Right-handed 310
Helix 24
AC6
B
243 256Right-handed alpha
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There are 4 sheets in PDB entry 5M09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
12 20anti-parallel
Strand 3
A
24 31anti-parallel
Strand 4
A
34 43anti-parallel
Strand 5
A
84 89anti-parallel
Strand 6
A
75 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
143 146anti-parallel
Strand 3
A
155 157anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
12 20anti-parallel
Strand 3
B
24 30anti-parallel
Strand 4
B
38 43anti-parallel
Strand 5
B
84 90anti-parallel
Strand 6
B
75 81anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
143 146anti-parallel
Strand 3
B
155 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il