Analysis of interatomic Contacts of Structural Units in PDB entry:
5M0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M0J entry

There are 10 chains in PDB entry 5M0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ASP 6GLY 242
C
 ASP 6LYS 245
B
 ASP 6LYS 245
A
 ASP 6LYS 243
J
 ASN 338ARG 369
G
 ASN 338VAL 367
H
 ASN 339ALA 371
I
 ARG 342ALA 371
E
 G 1 G 28
F
 G 1 G 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5M0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
12 43Right-handed alpha
Helix 2
AA2
D
44 47Right-handed 310
Helix 3
AA3
D
48 72Right-handed alpha
Helix 4
AA4
D
73 78Right-handed 310
Helix 5
AA5
D
91 119Right-handed alpha
Helix 6
AA6
D
119 130Right-handed alpha
Helix 7
AA7
D
131 135Right-handed 310
Helix 8
AA8
D
137 162Right-handed alpha
Helix 9
AA9
D
171 184Right-handed alpha
Helix 10
AB1
D
204 241Right-handed alpha
Helix 11
AB2
C
12 43Right-handed alpha
Helix 12
AB3
C
44 47Right-handed 310
Helix 13
AB4
C
48 72Right-handed alpha
Helix 14
AB5
C
73 78Right-handed 310
Helix 15
AB6
C
91 119Right-handed alpha
Helix 16
AB7
C
119 130Right-handed alpha
Helix 17
AB8
C
137 162Right-handed alpha
Helix 18
AB9
C
171 185Right-handed alpha
Helix 19
AC1
C
193 197Right-handed 310
Helix 20
AC2
C
204 241Right-handed alpha
Helix 21
AC3
B
12 43Right-handed alpha
Helix 22
AC4
B
44 47Right-handed 310
Helix 23
AC5
B
48 72Right-handed alpha
Helix 24
AC6
B
73 78Right-handed 310
Helix 25
AC7
B
91 119Right-handed alpha
Helix 26
AC8
B
119 130Right-handed alpha
Helix 27
AC9
B
137 162Right-handed alpha
Helix 28
AD1
B
166 170Right-handed 310
Helix 29
AD2
B
171 184Right-handed alpha
Helix 30
AD3
B
193 197Right-handed 310
Helix 31
AD4
B
204 241Right-handed alpha
Helix 32
AD5
A
12 43Right-handed alpha
Helix 33
AD6
A
44 47Right-handed 310
Helix 34
AD7
A
48 72Right-handed alpha
Helix 35
AD8
A
73 78Right-handed 310
Helix 36
AD9
A
91 119Right-handed alpha
Helix 37
AE1
A
119 130Right-handed alpha
Helix 38
AE2
A
131 135Right-handed 310
Helix 39
AE3
A
137 162Right-handed alpha
Helix 40
AE4
A
166 170Right-handed 310
Helix 41
AE5
A
171 185Right-handed alpha
Helix 42
AE6
A
193 197Right-handed 310
Helix 43
AE7
A
204 241Right-handed alpha
Helix 44
AE8
J
339 343Right-handed alpha
Helix 45
AE9
G
339 343Right-handed alpha
Helix 46
AF1
H
341 345Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5M0J.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
H
367 368anti-parallel
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