Analysis of interatomic Contacts of Structural Units in PDB entry:
5M0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M0K entry

There are 2 chains in PDB entry 5M0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ALA 301
B
 THR 3ALA 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5M0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
21 26Right-handed 310
Helix 3
AA3
A
27 38Right-handed alpha
Helix 4
AA4
A
48 53Right-handed alpha
Helix 5
AA5
A
61 74Right-handed alpha
Helix 6
AA6
A
90 95Right-handed alpha
Helix 7
AA7
A
97 116Right-handed alpha
Helix 8
AA8
A
143 148Right-handed 310
Helix 9
AA9
A
149 162Right-handed alpha
Helix 10
AB1
A
178 195Right-handed alpha
Helix 11
AB2
A
214 224Right-handed alpha
Helix 12
AB3
A
241 255Right-handed alpha
Helix 13
AB4
A
268 272Right-handed 310
Helix 14
AB5
A
289 301Right-handed alpha
Helix 15
AB6
B
4 11Right-handed alpha
Helix 16
AB7
B
21 25Right-handed 310
Helix 17
AB8
B
27 38Right-handed alpha
Helix 18
AB9
B
48 53Right-handed alpha
Helix 19
AC1
B
61 74Right-handed alpha
Helix 20
AC2
B
90 95Right-handed alpha
Helix 21
AC3
B
97 116Right-handed alpha
Helix 22
AC4
B
143 148Right-handed 310
Helix 23
AC5
B
149 162Right-handed alpha
Helix 24
AC6
B
178 195Right-handed alpha
Helix 25
AC7
B
214 224Right-handed alpha
Helix 26
AC8
B
241 255Right-handed alpha
Helix 27
AC9
B
268 272Right-handed 310
Helix 28
AD1
B
289 301Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5M0K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
228 236parallel
Strand 3
A
259 264parallel
Strand 4
A
15 20parallel
Strand 5
A
40 43parallel
Strand 6
A
77 85parallel
Strand 7
A
122 127parallel
Strand 8
A
166 171parallel
Strand 9
A
200 203parallel
Strand 10
A
228 236parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
228 236parallel
Strand 3
B
259 264parallel
Strand 4
B
15 20parallel
Strand 5
B
40 43parallel
Strand 6
B
77 80parallel
Strand 7
B
122 127parallel
Strand 8
B
166 171parallel
Strand 9
B
200 203parallel
Strand 10
B
228 236parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il