Analysis of interatomic Contacts of Structural Units in PDB entry:
5M0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M0T entry

There are 2 chains in PDB entry 5M0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ALA 293
B
 PRO 9ASN 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5M0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
40 52Right-handed alpha
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
64 71Right-handed alpha
Helix 5
AA5
A
83 89Right-handed alpha
Helix 6
AA6
A
90 92Right-handed 310
Helix 7
AA7
A
93 105Right-handed alpha
Helix 8
AA8
A
132 136Right-handed 310
Helix 9
AA9
A
137 144Right-handed alpha
Helix 10
AB1
A
145 147Right-handed 310
Helix 11
AB2
A
173 177Right-handed 310
Helix 12
AB3
A
186 190Right-handed 310
Helix 13
AB4
A
238 242Right-handed 310
Helix 14
AB5
A
243 248Right-handed alpha
Helix 15
AB6
A
251 258Right-handed alpha
Helix 16
AB7
A
277 282Right-handed alpha
Helix 17
AB8
B
19 31Right-handed alpha
Helix 18
AB9
B
40 52Right-handed alpha
Helix 19
AC1
B
53 55Right-handed 310
Helix 20
AC2
B
64 71Right-handed alpha
Helix 21
AC3
B
83 89Right-handed alpha
Helix 22
AC4
B
90 92Right-handed 310
Helix 23
AC5
B
93 105Right-handed alpha
Helix 24
AC6
B
132 136Right-handed 310
Helix 25
AC7
B
137 144Right-handed alpha
Helix 26
AC8
B
145 147Right-handed 310
Helix 27
AC9
B
173 177Right-handed 310
Helix 28
AD1
B
186 190Right-handed 310
Helix 29
AD2
B
238 242Right-handed 310
Helix 30
AD3
B
243 248Right-handed alpha
Helix 31
AD4
B
251 258Right-handed alpha
Helix 32
AD5
B
277 282Right-handed alpha
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There are 8 sheets in PDB entry 5M0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
32 36parallel
Strand 3
A
200 204anti-parallel
Strand 4
A
151 157anti-parallel
Strand 5
A
221 230anti-parallel
Strand 6
A
118 121anti-parallel
Strand 7
A
74 76anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
32 36parallel
Strand 3
A
200 204anti-parallel
Strand 4
A
151 157anti-parallel
Strand 5
A
221 230anti-parallel
Strand 6
A
111 116anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
169 170anti-parallel
Strand 3
A
209 210anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
268 270anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
32 36parallel
Strand 3
B
200 204anti-parallel
Strand 4
B
151 157anti-parallel
Strand 5
B
221 230anti-parallel
Strand 6
B
118 121anti-parallel
Strand 7
B
74 76anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
32 36parallel
Strand 3
B
200 204anti-parallel
Strand 4
B
151 157anti-parallel
Strand 5
B
221 230anti-parallel
Strand 6
B
111 116anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
169 170anti-parallel
Strand 3
B
209 210anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 265first strand
Strand 2
B
268 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il