Analysis of interatomic Contacts of Structural Units in PDB entry:
5M0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M0Y entry

There are 2 chains in PDB entry 5M0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 8TYR 164
A
 ASP 16VAL 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5M0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
22 24Right-handed 310
Helix 2
AA2
B
25 31Right-handed alpha
Helix 3
AA3
B
113 122Right-handed alpha
Helix 4
AA4
B
134 138Right-handed 310
Helix 5
AA5
B
146 156Right-handed alpha
Helix 6
AA6
B
160 164Right-handed 310
Helix 7
AA7
A
87 90Right-handed 310
Helix 8
AA8
A
99 102Right-handed 310
Helix 9
AA9
A
113 121Right-handed alpha
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There are 6 sheets in PDB entry 5M0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 57first strand
Strand 2
B
9 16anti-parallel
Strand 3
B
85 87parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 57first strand
Strand 2
B
9 16anti-parallel
Strand 3
B
95 96parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
63 69anti-parallel
Strand 4
B
76 81anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
127 136anti-parallel
Strand 3
A
35 43anti-parallel
Strand 4
A
20 25anti-parallel
Strand 5
A
173 175parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
145 146anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
159 163anti-parallel
Strand 5
A
168 169anti-parallel
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