Analysis of interatomic Contacts of Structural Units in PDB entry:
5M1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M1P entry

There are 2 chains in PDB entry 5M1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 255TYR 441
B
 PRO 254GLU 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5M1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
262 266Right-handed 310
Helix 2
AA2
A
324 339Right-handed alpha
Helix 3
AA3
A
352 362Right-handed alpha
Helix 4
AA4
A
373 390Right-handed alpha
Helix 5
AA5
A
398 407Right-handed alpha
Helix 6
AA6
A
428 439Right-handed alpha
Helix 7
AA7
B
262 266Right-handed 310
Helix 8
AA8
B
324 339Right-handed alpha
Helix 9
AA9
B
353 362Right-handed alpha
Helix 10
AB1
B
373 390Right-handed alpha
Helix 11
AB2
B
398 407Right-handed alpha
Helix 12
AB3
B
428 439Right-handed alpha
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There are 6 sheets in PDB entry 5M1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
394 396parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
277 279anti-parallel
Strand 3
A
313 321anti-parallel
Strand 4
A
301 308anti-parallel
Strand 5
A
289 294anti-parallel
Strand 6
A
343 346parallel
Strand 7
A
366 368parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 412first strand
Strand 2
A
418 422anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 269first strand
Strand 2
B
394 396parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 274first strand
Strand 2
B
277 279anti-parallel
Strand 3
B
314 320anti-parallel
Strand 4
B
302 308anti-parallel
Strand 5
B
289 294anti-parallel
Strand 6
B
343 346parallel
Strand 7
B
366 368parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 412first strand
Strand 2
B
418 422anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il