Analysis of interatomic Contacts of Structural Units in PDB entry:
5M1S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M1S entry

There are 7 chains in PDB entry 5M1S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 927
B	MET 1	LEU 366
C	MET 1	LEU 366
D	ARG 7	ALA 243
P	T 5	T 21
T	G 4	A 25
F	GLN 10	ASN 65

There are 85 helices in PDB entry 5M1S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	17	Right-handed 310
Helix 2	AA2	A	23	34	Right-handed alpha
Helix 3	AA3	A	49	61	Right-handed alpha
Helix 4	AA4	A	90	108	Right-handed alpha
Helix 5	AA5	A	119	122	Right-handed 310
Helix 6	AA6	A	133	136	Right-handed 310
Helix 7	AA7	A	137	146	Right-handed alpha
Helix 8	AA8	A	147	162	Right-handed alpha
Helix 9	AA9	A	177	193	Right-handed alpha
Helix 10	AB1	A	206	208	Right-handed 310
Helix 11	AB2	A	209	222	Right-handed alpha
Helix 12	AB3	A	242	250	Right-handed alpha
Helix 13	AB4	A	253	267	Right-handed alpha
Helix 14	AB5	A	287	308	Right-handed alpha
Helix 15	AB6	A	310	336	Right-handed alpha
Helix 16	AB7	A	337	354	Right-handed alpha
Helix 17	AB8	A	364	367	Right-handed 310
Helix 18	AB9	A	368	374	Right-handed alpha
Helix 19	AC1	A	387	392	Right-handed alpha
Helix 20	AC2	A	407	409	Right-handed 310
Helix 21	AC3	A	410	423	Right-handed alpha
Helix 22	AC4	A	437	449	Right-handed alpha
Helix 23	AC5	A	452	461	Right-handed alpha
Helix 24	AC6	A	470	478	Right-handed alpha
Helix 25	AC7	A	479	487	Right-handed alpha
Helix 26	AC8	A	488	502	Right-handed alpha
Helix 27	AC9	A	521	525	Right-handed 310
Helix 28	AD1	A	542	549	Right-handed alpha
Helix 29	AD2	A	559	580	Right-handed alpha
Helix 30	AD3	A	585	589	Right-handed 310
Helix 31	AD4	A	593	602	Right-handed alpha
Helix 32	AD5	A	613	624	Right-handed alpha
Helix 33	AD6	A	627	638	Right-handed alpha
Helix 34	AD7	A	639	644	Right-handed alpha
Helix 35	AD8	A	646	656	Right-handed alpha
Helix 36	AD9	A	670	672	Right-handed 310
Helix 37	AE1	A	673	678	Right-handed alpha
Helix 38	AE2	A	679	681	Right-handed 310
Helix 39	AE3	A	686	699	Right-handed alpha
Helix 40	AE4	A	701	715	Right-handed alpha
Helix 41	AE5	A	716	734	Right-handed alpha
Helix 42	AE6	A	737	755	Right-handed alpha
Helix 43	AE7	A	757	778	Right-handed alpha
Helix 44	AE8	A	778	790	Right-handed alpha
Helix 45	AE9	A	793	808	Right-handed alpha
Helix 46	AF1	A	842	856	Right-handed alpha
Helix 47	AF2	A	861	869	Right-handed alpha
Helix 48	AF3	A	875	886	Right-handed alpha
Helix 49	AF4	A	895	919	Right-handed alpha
Helix 50	AF5	B	7	18	Right-handed alpha
Helix 51	AF6	B	27	30	Right-handed 310
Helix 52	AF7	B	72	82	Right-handed alpha
Helix 53	AF8	B	114	116	Right-handed 310
Helix 54	AF9	B	132	144	Right-handed alpha
Helix 55	AG1	B	152	155	Right-handed 310
Helix 56	AG2	B	197	207	Right-handed alpha
Helix 57	AG3	B	243	248	Right-handed alpha
Helix 58	AG4	B	260	272	Right-handed alpha
Helix 59	AG5	B	321	331	Right-handed alpha
Helix 60	AG6	C	6	19	Right-handed alpha
Helix 61	AG7	C	27	30	Right-handed 310
Helix 62	AG8	C	72	81	Right-handed alpha
Helix 63	AG9	C	112	116	Right-handed 310
Helix 64	AH1	C	132	141	Right-handed alpha
Helix 65	AH2	C	142	146	Right-handed 310
Helix 66	AH3	C	197	207	Right-handed alpha
Helix 67	AH4	C	243	248	Right-handed alpha
Helix 68	AH5	C	260	272	Right-handed alpha
Helix 69	AH6	C	320	331	Right-handed alpha
Helix 70	AH7	D	59	67	Right-handed alpha
Helix 71	AH8	D	69	73	Right-handed 310
Helix 72	AH9	D	82	91	Right-handed alpha
Helix 73	AI1	D	99	114	Right-handed alpha
Helix 74	AI2	D	120	124	Right-handed 310
Helix 75	AI3	D	130	138	Right-handed alpha
Helix 76	AI4	D	144	152	Right-handed alpha
Helix 77	AI5	D	163	180	Right-handed alpha
Helix 78	AI6	D	218	237	Right-handed alpha
Helix 79	AI7	D	239	243	Right-handed 310
Helix 80	AI8	F	10	10	Right-handed 310
Helix 81	AI9	F	11	23	Right-handed alpha
Helix 82	AJ1	F	24	31	Right-handed 310
Helix 83	AJ2	F	38	44	Right-handed alpha
Helix 84	AJ3	F	45	47	Right-handed 310
Helix 85	AJ4	F	48	63	Right-handed alpha

There are 14 sheets in PDB entry 5M1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	63	69	parallel
Strand 3	A	85	88	anti-parallel
Strand 4	A	128	131	anti-parallel
Strand 5	A	166	170	parallel
Strand 6	A	196	198	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	116	117	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	555	556	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	427	430	anti-parallel
Strand 3	A	538	539	parallel
Strand 4	A	528	529	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	87	93	anti-parallel
Strand 3	B	96	101	anti-parallel
Strand 4	B	104	107	anti-parallel
Strand 5	C	301	310	anti-parallel
Strand 6	C	289	295	anti-parallel
Strand 7	C	282	286	anti-parallel
Strand 8	C	316	317	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	87	93	anti-parallel
Strand 3	B	96	101	anti-parallel
Strand 4	B	104	107	anti-parallel
Strand 5	C	301	310	anti-parallel
Strand 6	C	254	259	anti-parallel
Strand 7	C	335	340	anti-parallel
Strand 8	C	347	351	anti-parallel
Strand 9	C	358	361	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	66	71	anti-parallel
Strand 3	B	32	38	anti-parallel
Strand 4	B	41	47	anti-parallel
Strand 5	B	51	58	anti-parallel
Strand 6	B	230	235	anti-parallel
Strand 7	B	222	227	anti-parallel
Strand 8	B	213	218	anti-parallel
Strand 9	B	126	131	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	361	first strand
Strand 2	B	176	196	anti-parallel
Strand 3	B	157	172	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	254	259	anti-parallel
Strand 3	B	335	340	anti-parallel
Strand 4	B	348	351	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	280	286	anti-parallel
Strand 3	B	289	295	anti-parallel
Strand 4	B	301	304	anti-parallel
Strand 5	C	104	107	anti-parallel
Strand 6	C	96	101	anti-parallel
Strand 7	C	88	93	anti-parallel
Strand 8	C	2	3	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	41	45	anti-parallel
Strand 4	C	51	58	anti-parallel
Strand 5	C	230	235	anti-parallel
Strand 6	C	222	227	anti-parallel
Strand 7	C	213	218	anti-parallel
Strand 8	C	126	131	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	183	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	157	163	anti-parallel
Strand 4	C	191	196	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	42	43	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	126	129	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M1S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M1S