Analysis of interatomic Contacts of Structural Units in PDB entry:
5M1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M1T entry

There are 2 chains in PDB entry 5M1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 435LEU 681
B
 ARG 448LEU 681
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5M1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
435 443Right-handed alpha
Helix 2
AA2
A
483 486Right-handed 310
Helix 3
AA3
A
487 495Right-handed alpha
Helix 4
AA4
A
496 518Right-handed alpha
Helix 5
AA5
A
530 536Right-handed alpha
Helix 6
AA6
A
538 550Right-handed alpha
Helix 7
AA7
A
553 555Right-handed 310
Helix 8
AA8
A
563 569Right-handed alpha
Helix 9
AA9
A
569 583Right-handed alpha
Helix 10
AB1
A
598 605Right-handed alpha
Helix 11
AB2
A
613 619Right-handed alpha
Helix 12
AB3
A
620 622Right-handed 310
Helix 13
AB4
A
623 641Right-handed alpha
Helix 14
AB5
A
651 662Right-handed alpha
Helix 15
AB6
A
676 681Right-handed alpha
Helix 16
AB7
B
483 486Right-handed 310
Helix 17
AB8
B
487 495Right-handed alpha
Helix 18
AB9
B
496 516Right-handed alpha
Helix 19
AC1
B
530 536Right-handed alpha
Helix 20
AC2
B
538 550Right-handed alpha
Helix 21
AC3
B
553 555Right-handed 310
Helix 22
AC4
B
563 569Right-handed alpha
Helix 23
AC5
B
569 583Right-handed alpha
Helix 24
AC6
B
598 605Right-handed alpha
Helix 25
AC7
B
614 617Right-handed 310
Helix 26
AC8
B
624 641Right-handed alpha
Helix 27
AC9
B
651 662Right-handed alpha
Helix 28
AD1
B
676 681Right-handed alpha
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There are 2 sheets in PDB entry 5M1T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 482first strand
Strand 2
A
465 476anti-parallel
Strand 3
A
524 528parallel
Strand 4
A
557 562parallel
Strand 5
A
586 592parallel
Strand 6
A
609 612parallel
Strand 7
A
643 647parallel
Strand 8
A
665 667parallel
Strand 9
A
450 459anti-parallel
Strand 10
A
465 476anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
451 459first strand
Strand 2
B
465 473anti-parallel
Strand 3
B
524 529parallel
Strand 4
B
557 562parallel
Strand 5
B
586 592parallel
Strand 6
B
609 612parallel
Strand 7
B
643 647parallel
Strand 8
B
665 667parallel
Strand 9
B
451 459anti-parallel
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