Analysis of interatomic Contacts of Structural Units in PDB entry:
5M2G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M2G entry

There are 2 chains in PDB entry 5M2G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	LYS 462
B	ALA 7	VAL 461

There are 46 helices in PDB entry 5M2G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	14	Right-handed alpha
Helix 2	AA2	A	32	36	Right-handed 310
Helix 3	AA3	A	40	44	Right-handed alpha
Helix 4	AA4	A	56	70	Right-handed alpha
Helix 5	AA5	A	81	96	Right-handed alpha
Helix 6	AA6	A	97	99	Right-handed 310
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	127	129	Right-handed 310
Helix 9	AA9	A	139	154	Right-handed alpha
Helix 10	AB1	A	165	169	Right-handed 310
Helix 11	AB2	A	181	188	Right-handed 310
Helix 12	AB3	A	226	231	Right-handed alpha
Helix 13	AB4	A	235	263	Right-handed alpha
Helix 14	AB5	A	276	284	Right-handed alpha
Helix 15	AB6	A	324	333	Right-handed alpha
Helix 16	AB7	A	333	339	Right-handed alpha
Helix 17	AB8	A	368	380	Right-handed alpha
Helix 18	AB9	A	384	390	Right-handed alpha
Helix 19	AC1	A	391	394	Right-handed 310
Helix 20	AC2	A	409	413	Right-handed 310
Helix 21	AC3	A	432	437	Right-handed alpha
Helix 22	AC4	A	441	445	Right-handed 310
Helix 23	AC5	A	449	454	Right-handed 310
Helix 24	AC6	A	456	461	Right-handed alpha
Helix 25	AC7	B	8	14	Right-handed alpha
Helix 26	AC8	B	32	36	Right-handed 310
Helix 27	AC9	B	56	70	Right-handed alpha
Helix 28	AD1	B	81	96	Right-handed alpha
Helix 29	AD2	B	97	99	Right-handed 310
Helix 30	AD3	B	119	126	Right-handed alpha
Helix 31	AD4	B	127	129	Right-handed 310
Helix 32	AD5	B	139	154	Right-handed alpha
Helix 33	AD6	B	165	169	Right-handed 310
Helix 34	AD7	B	181	186	Right-handed alpha
Helix 35	AD8	B	226	231	Right-handed alpha
Helix 36	AD9	B	235	263	Right-handed alpha
Helix 37	AE1	B	276	284	Right-handed alpha
Helix 38	AE2	B	324	333	Right-handed alpha
Helix 39	AE3	B	333	339	Right-handed alpha
Helix 40	AE4	B	368	380	Right-handed alpha
Helix 41	AE5	B	384	390	Right-handed alpha
Helix 42	AE6	B	391	394	Right-handed 310
Helix 43	AE7	B	432	437	Right-handed alpha
Helix 44	AE8	B	441	445	Right-handed 310
Helix 45	AE9	B	449	454	Right-handed 310
Helix 46	AF1	B	456	461	Right-handed alpha

There are 11 sheets in PDB entry 5M2G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	53	55	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	77	78	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	163	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	304	311	anti-parallel
Strand 4	A	267	269	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	190	197	anti-parallel
Strand 3	A	209	212	parallel
Strand 4	A	203	204	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	295	296	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	405	407	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	53	55	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	77	78	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	163	first strand
Strand 2	B	217	224	anti-parallel
Strand 3	B	304	311	anti-parallel
Strand 4	B	267	268	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	175	first strand
Strand 2	B	190	197	anti-parallel
Strand 3	B	209	212	parallel
Strand 4	B	203	204	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	295	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M2G

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M2G