Analysis of interatomic Contacts of Structural Units in PDB entry:
5M2M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M2M entry

There are 10 chains in PDB entry 5M2M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	LEU 157
B	THR 7	LEU 157
C	THR 7	LEU 157
D	GLN 3	SER 129
E	GLN 3	SER 129
F	GLN 3	SER 129
G	THR 7	LEU 157
H	GLN 3	SER 129
I	THR 7	LEU 157
J	GLN 3	TRP 41

There are 17 helices in PDB entry 5M2M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	142	Right-handed 310
Helix 2	AA2	B	138	142	Right-handed 310
Helix 3	AA3	C	138	142	Right-handed 310
Helix 4	AA4	D	92	96	Right-handed 310
Helix 5	AA5	D	112	116	Right-handed 310
Helix 6	AA6	E	92	96	Right-handed 310
Helix 7	AA7	E	112	116	Right-handed 310
Helix 8	AA8	F	92	96	Right-handed 310
Helix 9	AA9	F	112	116	Right-handed 310
Helix 10	AB1	G	138	142	Right-handed 310
Helix 11	AB2	H	92	96	Right-handed 310
Helix 12	AB3	H	112	116	Right-handed 310
Helix 13	AB4	I	138	142	Right-handed 310
Helix 14	AB5	J	92	96	Right-handed 310
Helix 15	AB6	J	112	116	Right-handed 310
Helix 16	AB7	N	92	96	Right-handed 310
Helix 17	AB8	N	112	116	Right-handed 310

There are 36 sheets in PDB entry 5M2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	13	18	anti-parallel
Strand 3	A	36	38	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	13	18	anti-parallel
Strand 3	A	151	156	anti-parallel
Strand 4	A	54	67	anti-parallel
Strand 5	A	113	126	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	48	49	anti-parallel
Strand 3	A	131	136	anti-parallel
Strand 4	A	76	83	anti-parallel
Strand 5	A	90	98	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	13	18	anti-parallel
Strand 3	B	36	38	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	13	18	anti-parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	54	67	anti-parallel
Strand 5	B	113	126	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	48	49	anti-parallel
Strand 3	B	131	136	anti-parallel
Strand 4	B	76	83	anti-parallel
Strand 5	B	90	98	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	13	18	anti-parallel
Strand 3	C	36	38	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	13	18	anti-parallel
Strand 3	C	151	156	anti-parallel
Strand 4	C	54	67	anti-parallel
Strand 5	C	113	126	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	48	49	anti-parallel
Strand 3	C	131	136	anti-parallel
Strand 4	C	76	83	anti-parallel
Strand 5	C	90	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	83	88	anti-parallel
Strand 4	D	73	78	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	123	127	parallel
Strand 3	D	97	105	anti-parallel
Strand 4	D	37	44	anti-parallel
Strand 5	D	51	57	anti-parallel
Strand 6	D	63	65	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	123	127	parallel
Strand 3	D	97	105	anti-parallel
Strand 4	D	118	119	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	83	88	anti-parallel
Strand 4	E	73	78	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	123	127	parallel
Strand 3	E	97	105	anti-parallel
Strand 4	E	37	44	anti-parallel
Strand 5	E	51	57	anti-parallel
Strand 6	E	63	65	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	123	127	parallel
Strand 3	E	97	105	anti-parallel
Strand 4	E	118	119	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	83	88	anti-parallel
Strand 4	F	73	78	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	123	127	parallel
Strand 3	F	97	105	anti-parallel
Strand 4	F	37	44	anti-parallel
Strand 5	F	51	57	anti-parallel
Strand 6	F	63	65	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	123	127	parallel
Strand 3	F	97	105	anti-parallel
Strand 4	F	118	119	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	29	first strand
Strand 2	G	13	18	anti-parallel
Strand 3	G	36	38	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	29	first strand
Strand 2	G	13	18	anti-parallel
Strand 3	G	151	156	anti-parallel
Strand 4	G	54	67	anti-parallel
Strand 5	G	113	126	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	G	48	49	anti-parallel
Strand 3	G	131	136	anti-parallel
Strand 4	G	76	83	anti-parallel
Strand 5	G	90	98	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	83	88	anti-parallel
Strand 4	H	73	78	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	123	127	parallel
Strand 3	H	97	105	anti-parallel
Strand 4	H	37	44	anti-parallel
Strand 5	H	51	57	anti-parallel
Strand 6	H	63	65	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	123	127	parallel
Strand 3	H	97	105	anti-parallel
Strand 4	H	118	119	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	29	first strand
Strand 2	I	13	18	anti-parallel
Strand 3	I	36	38	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	29	first strand
Strand 2	I	13	18	anti-parallel
Strand 3	I	151	156	anti-parallel
Strand 4	I	54	67	anti-parallel
Strand 5	I	113	126	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	42	43	first strand
Strand 2	I	48	49	anti-parallel
Strand 3	I	131	136	anti-parallel
Strand 4	I	76	83	anti-parallel
Strand 5	I	90	98	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	83	88	anti-parallel
Strand 4	J	73	78	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	123	127	parallel
Strand 3	J	97	105	anti-parallel
Strand 4	J	37	44	anti-parallel
Strand 5	J	51	57	anti-parallel
Strand 6	J	63	65	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	123	127	parallel
Strand 3	J	97	105	anti-parallel
Strand 4	J	118	119	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	28	29	first strand
Strand 2	M	13	18	anti-parallel
Strand 3	M	36	38	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	28	29	first strand
Strand 2	M	13	18	anti-parallel
Strand 3	M	151	156	anti-parallel
Strand 4	M	54	67	anti-parallel
Strand 5	M	113	126	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	42	43	first strand
Strand 2	M	48	49	anti-parallel
Strand 3	M	131	136	anti-parallel
Strand 4	M	76	83	anti-parallel
Strand 5	M	90	98	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	18	24	anti-parallel
Strand 3	N	83	88	anti-parallel
Strand 4	N	73	78	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	123	127	parallel
Strand 3	N	97	105	anti-parallel
Strand 4	N	37	44	anti-parallel
Strand 5	N	51	57	anti-parallel
Strand 6	N	63	65	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	123	127	parallel
Strand 3	N	97	105	anti-parallel
Strand 4	N	118	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M2M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M2M