Analysis of interatomic Contacts of Structural Units in PDB entry:
5M2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M2Q entry

There are 2 chains in PDB entry 5M2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23ASP 266
B
 MET 21VAL 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5M2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 40Right-handed alpha
Helix 2
AA2
A
54 60Right-handed 310
Helix 3
AA3
A
70 77Right-handed alpha
Helix 4
AA4
A
90 100Right-handed alpha
Helix 5
AA5
A
111 123Right-handed alpha
Helix 6
AA6
A
124 126Right-handed 310
Helix 7
AA7
A
128 151Right-handed alpha
Helix 8
AA8
A
174 183Right-handed alpha
Helix 9
AA9
A
200 207Right-handed alpha
Helix 10
AB1
A
240 245Right-handed alpha
Helix 11
AB2
A
250 263Right-handed alpha
Helix 12
AB3
B
30 40Right-handed alpha
Helix 13
AB4
B
54 60Right-handed 310
Helix 14
AB5
B
70 77Right-handed alpha
Helix 15
AB6
B
90 100Right-handed alpha
Helix 16
AB7
B
111 123Right-handed alpha
Helix 17
AB8
B
124 126Right-handed 310
Helix 18
AB9
B
128 150Right-handed alpha
Helix 19
AC1
B
174 183Right-handed alpha
Helix 20
AC2
B
200 207Right-handed alpha
Helix 21
AC3
B
240 246Right-handed alpha
Helix 22
AC4
B
250 263Right-handed alpha
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There are 6 sheets in PDB entry 5M2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
81 84parallel
Strand 3
A
104 106parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
62 64parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
156 162parallel
Strand 3
A
211 215parallel
Strand 4
A
236 238parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
81 84parallel
Strand 3
B
104 106parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
62 64parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
156 160parallel
Strand 3
B
211 214parallel
Strand 4
B
236 238parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il