Analysis of interatomic Contacts of Structural Units in PDB entry:
5M2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M2V entry

There are 2 chains in PDB entry 5M2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5PRO 257
B
 THR 5PRO 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5M2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
34 48Right-handed alpha
Helix 3
AA3
A
71 79Right-handed alpha
Helix 4
AA4
A
92 97Right-handed alpha
Helix 5
AA5
A
122 128Right-handed alpha
Helix 6
AA6
A
140 149Right-handed alpha
Helix 7
AA7
A
151 167Right-handed alpha
Helix 8
AA8
A
172 183Right-handed alpha
Helix 9
AA9
A
191 201Right-handed alpha
Helix 10
AB1
A
226 240Right-handed alpha
Helix 11
AB2
A
241 252Right-handed alpha
Helix 12
AB3
B
27 30Right-handed 310
Helix 13
AB4
B
34 48Right-handed alpha
Helix 14
AB5
B
71 79Right-handed alpha
Helix 15
AB6
B
92 97Right-handed alpha
Helix 16
AB7
B
122 128Right-handed alpha
Helix 17
AB8
B
140 149Right-handed alpha
Helix 18
AB9
B
151 167Right-handed alpha
Helix 19
AC1
B
172 183Right-handed alpha
Helix 20
AC2
B
191 201Right-handed alpha
Helix 21
AC3
B
226 240Right-handed alpha
Helix 22
AC4
B
241 252Right-handed alpha
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There are 10 sheets in PDB entry 5M2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
6 10parallel
Strand 3
A
84 85parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
32 33anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
219 220anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
214 216anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
185 190parallel
Strand 3
A
110 115anti-parallel
Strand 4
A
204 207anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
6 10parallel
Strand 3
B
84 85parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
32 33anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
219 220anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
214 216anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
185 190parallel
Strand 3
B
110 115anti-parallel
Strand 4
B
204 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il