Analysis of interatomic Contacts of Structural Units in PDB entry:
5M2Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M2Y entry

There are 2 chains in PDB entry 5M2Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 316THR 445
B
 ARG 317ARG 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5M2Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
336 341Right-handed 310
Helix 2
AA2
A
354 366Right-handed alpha
Helix 3
AA3
A
411 422Right-handed alpha
Helix 4
AA4
A
429 433Right-handed 310
Helix 5
AA5
B
336 341Right-handed 310
Helix 6
AA6
B
354 366Right-handed alpha
Helix 7
AA7
B
411 422Right-handed alpha
Helix 8
AA8
B
429 433Right-handed 310
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There are 4 sheets in PDB entry 5M2Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 321first strand
Strand 2
A
436 443anti-parallel
Strand 3
A
343 350anti-parallel
Strand 4
A
404 410anti-parallel
Strand 5
A
385 390anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
329 333anti-parallel
Strand 3
A
423 427anti-parallel
Strand 4
A
367 369anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 321first strand
Strand 2
B
436 443anti-parallel
Strand 3
B
343 350anti-parallel
Strand 4
B
404 410anti-parallel
Strand 5
B
385 390anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 326first strand
Strand 2
B
329 333anti-parallel
Strand 3
B
423 427anti-parallel
Strand 4
B
367 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il