Analysis of interatomic Contacts of Structural Units in PDB entry:
5M30

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5M30 entry

There are 6 chains in PDB entry 5M30 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 19	PHE 320
B	PHE 19	THR 445
C	PHE 19	PRO 315
D	GLN 1	SER 119
E	GLN 1	HIS 123
F	GLN 1	TYR 106

There are 36 helices in PDB entry 5M30. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	35	Right-handed alpha
Helix 2	AA2	A	51	54	Right-handed 310
Helix 3	AA3	A	89	92	Right-handed 310
Helix 4	AA4	A	190	193	Right-handed 310
Helix 5	AA5	A	194	218	Right-handed alpha
Helix 6	AA6	A	230	256	Right-handed alpha
Helix 7	AA7	A	261	276	Right-handed alpha
Helix 8	AA8	A	283	287	Right-handed 310
Helix 9	AA9	A	294	297	Right-handed 310
Helix 10	AB1	A	298	312	Right-handed alpha
Helix 11	AB2	B	20	35	Right-handed alpha
Helix 12	AB3	B	51	56	Right-handed 310
Helix 13	AB4	B	89	92	Right-handed 310
Helix 14	AB5	B	194	218	Right-handed alpha
Helix 15	AB6	B	233	256	Right-handed alpha
Helix 16	AB7	B	260	276	Right-handed alpha
Helix 17	AB8	B	277	279	Right-handed 310
Helix 18	AB9	B	283	287	Right-handed 310
Helix 19	AC1	B	294	297	Right-handed 310
Helix 20	AC2	B	298	312	Right-handed alpha
Helix 21	AC3	B	337	342	Right-handed alpha
Helix 22	AC4	B	354	366	Right-handed alpha
Helix 23	AC5	B	411	421	Right-handed alpha
Helix 24	AC6	B	429	433	Right-handed 310
Helix 25	AC7	C	20	35	Right-handed alpha
Helix 26	AC8	C	89	92	Right-handed 310
Helix 27	AC9	C	190	193	Right-handed 310
Helix 28	AD1	C	194	222	Right-handed alpha
Helix 29	AD2	C	231	256	Right-handed alpha
Helix 30	AD3	C	260	277	Right-handed alpha
Helix 31	AD4	C	283	287	Right-handed 310
Helix 32	AD5	C	294	297	Right-handed 310
Helix 33	AD6	C	298	314	Right-handed alpha
Helix 34	AD7	D	86	90	Right-handed 310
Helix 35	AD8	E	86	90	Right-handed 310
Helix 36	AD9	F	86	90	Right-handed 310

There are 23 sheets in PDB entry 5M30. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	50	first strand
Strand 2	A	58	67	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	50	first strand
Strand 2	A	58	67	anti-parallel
Strand 3	A	86	87	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	96	104	anti-parallel
Strand 3	A	162	172	anti-parallel
Strand 4	A	178	180	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	E	104	109	parallel
Strand 3	E	91	101	anti-parallel
Strand 4	E	113	118	anti-parallel
Strand 5	E	10	13	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	E	104	109	parallel
Strand 3	E	91	101	anti-parallel
Strand 4	E	31	39	anti-parallel
Strand 5	E	46	52	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	125	127	parallel
Strand 3	A	146	148	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	50	first strand
Strand 2	B	58	67	anti-parallel
Strand 3	B	73	75	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	50	first strand
Strand 2	B	58	67	anti-parallel
Strand 3	B	86	87	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	96	104	anti-parallel
Strand 3	B	162	172	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	145	148	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	436	443	anti-parallel
Strand 3	B	343	350	anti-parallel
Strand 4	B	404	409	anti-parallel
Strand 5	B	386	389	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	325	first strand
Strand 2	B	329	333	anti-parallel
Strand 3	B	423	427	anti-parallel
Strand 4	B	367	369	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	50	first strand
Strand 2	C	58	67	anti-parallel
Strand 3	C	73	75	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	50	first strand
Strand 2	C	58	67	anti-parallel
Strand 3	C	86	87	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	96	104	anti-parallel
Strand 3	C	162	172	anti-parallel
Strand 4	C	178	180	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	F	104	109	parallel
Strand 3	F	91	101	anti-parallel
Strand 4	F	113	118	anti-parallel
Strand 5	F	10	13	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	F	104	109	parallel
Strand 3	F	91	101	anti-parallel
Strand 4	F	31	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	146	148	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	D	18	26	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	113	118	parallel
Strand 3	D	91	101	anti-parallel
Strand 4	D	31	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	113	118	parallel
Strand 3	D	91	101	anti-parallel
Strand 4	D	104	109	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	7	first strand
Strand 2	E	18	26	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	18	26	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5M30

Analysis of interatomic Contacts of Structural Units in PDB entry:
5M30