Analysis of interatomic Contacts of Structural Units in PDB entry:
5M35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M35 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 5M35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ALA 24
A
 MET 26SER 230
B
 ASP 2ALA 24
B
 MET 26SER 230
C
 LEU 211PRO 215
C
 MET 217ASN 220
D
 ARG 213PRO 215
D
 MET 217GLU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5M35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 16Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
37 69Right-handed alpha
Helix 4
AA4
A
73 104Right-handed alpha
Helix 5
AA5
A
111 132Right-handed alpha
Helix 6
AA6
A
137 160Right-handed alpha
Helix 7
AA7
A
164 181Right-handed alpha
Helix 8
AA8
A
184 202Right-handed alpha
Helix 9
AA9
A
207 228Right-handed alpha
Helix 10
AB1
B
3 16Right-handed alpha
Helix 11
AB2
B
18 32Right-handed alpha
Helix 12
AB3
B
37 69Right-handed alpha
Helix 13
AB4
B
74 104Right-handed alpha
Helix 14
AB5
B
111 131Right-handed alpha
Helix 15
AB6
B
137 160Right-handed alpha
Helix 16
AB7
B
164 181Right-handed alpha
Helix 17
AB8
B
184 202Right-handed alpha
Helix 18
AB9
B
210 229Right-handed alpha
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There are no sheets in PDB entry 5M35
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il